Clone UFO12140 Report

Search the DGRC for UFO12140

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:121
Well:40
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG7135-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12140.5prime Sequence

544 bp (468 high quality bases) assembled on 2012-07-26

> UFO12140.5prime
GGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGC
ATACATTATACGAAGTTATCAGTCGACATGTCGGACGCACTGGAGGAGCC
ACCATTGTACCTTACGCCGCAGTTCTTCAGGCGCACCCTGGAGCACGGAT
TGCAGCAGCTGGACCTGCAGGTCATCGGTGTCCAGCTGACCAATCTGACG
CGTGGCGGGGAAAACTACTGCAGCAACATTTACCGAGCTCAGATTAAGTA
TCGCAATGCCGAGAGCTGCGCAATGGAGACATCCCTGATCGTCAAGTCCA
TGCCGGACGAGAAGCAGGCCATTCTGGCCCGCCTGCACATTTATAACAAG
GAGACGCTTTTCTACATGCACATCAAGCCCAAGCTGGAGGCACTCATGTG
GAGGGCGGTGGATAGTTTCAGCGCTTGGACTTTGGCTCCCAAGCACTACT
ATTCCACGACCCAGCCGGAGCAGACGATCATCCGGAGGACCTTTGCCCCC
CAGCTATCAGTTGAAGTGCCGCCACTGGGTCTGGACTTTGAACA

UFO12140.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7135-RA 1518 CG7135-RA 29..495 78..541 2230 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18103681..18104046 78..443 1830 100 Plus
X 23542271 X 18104110..18104211 443..541 330 95.1 Plus
Blast to na_te.dros performed on 2014-11-28 18:01:06 has no hits.

UFO12140.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:45 Download gff for UFO12140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7135-RA 1..468 78..543 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:31 Download gff for UFO12140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7135-RA 25..496 70..543 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:55 Download gff for UFO12140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7135-RA 25..496 70..543 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:55 Download gff for UFO12140.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18103677..18104045 70..442 98 -> Plus
X 18104110..18104212 443..543 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:31 Download gff for UFO12140.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17997710..17998078 70..442 98 -> Plus
arm_X 17998143..17998245 443..543 94   Plus