UFO12142.5prime Sequence
1162 bp (1024 high quality bases) assembled on 2012-07-26
> UFO12142.5prime
AGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAG
CATACATTATACGAAGTTATCAGTCGACATGAAACAGTTGATTTTCCTGC
TGATTTGTTTGAGCTGCGGCACCTGCTCCATTTACGCACTGAAATGCAGA
TCCCAGGAGGGACTAAGTGAAGCGGAGCTCAAGCGAACTGTGCGCAACTG
TATGCATCGCCAGGACGAGGACGAAGATCGAGGACGAGGTGGACAGGGCC
GGCAAGGAAATGGCTATGAGTACGGTTACGGAATGGATCACGATCAGGAG
GAGCAGGACAGGAATCCAGGCAACAGGGGCGGCTATGGCAATCGAAGGCA
GCGAGGACTAAGGCAATCGGATGGCAGGAACCACACCAGCAACGATGGAG
GTCAGTGTGTGGCCCAGTGCTTTTTCGAGGAGATGAATATGGTGGATGGC
AATGGGATGCCCGATCGGCGCAAGGTGAGCTATTTGCTGACCAAGGACCT
TCGGGACCGGGAGCTGCGCAACTTCTTCACGGACACCGTGCAGCAGTGCT
TCCGCTATCTGGAGAGCAACGGAAGGGGCCGGCACCACAAGTGTTCAGCG
GCCCGGGAACTGGTCAAGTGCATGTCGGAGTACGCGAAGGCGCAGTGCGA
GGATTGGGAGGAGCACGGCAACATGCTCTTCAATGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCGCCCTGCACTCATCGCAGTACTGT
GTAATCATAGCATTCTGCCGACATGGAAGCCATCACAACGCATGATGACT
GATCGCAGCGCATCAGCACTGTCGCTGCGTATAATATTGCCCATGGTGAA
ACGGGGCGAGAGTTGTCATATTGCCACGTTAATCAACCTGGTGACTCACC
AGATGCTGAAACGAAACCATTCCATAACCTAGAAATGGCAGTTACGTAAC
GCCACTTGCAAT
UFO12142.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp59a-RB | 1011 | CG13517-RB | 23..628 | 79..684 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22702717..22703081 | 79..443 | 1825 | 100 | Plus |
| 2R | 25286936 | 2R | 22703160..22703403 | 441..684 | 1220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:01:10 has no hits.
UFO12142.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:46 Download gff for
UFO12142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp59a-RB | 1..613 | 79..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:36 Download gff for
UFO12142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp59a-RB | 23..635 | 79..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:00 Download gff for
UFO12142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp59a-RB | 23..635 | 79..692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:00 Download gff for
UFO12142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22703161..22703410 | 442..692 | 98 | == | Plus |
| 2R | 22702717..22703079 | 79..441 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:36 Download gff for
UFO12142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18590222..18590584 | 79..441 | 100 | -> | Plus |
| arm_2R | 18590666..18590915 | 442..692 | 98 | == | Plus |
