Clone UFO12149 Report

Search the DGRC for UFO12149

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:121
Well:49
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG42500-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12149.5prime Sequence

660 bp (559 high quality bases) assembled on 2012-07-26

> UFO12149.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGAAGTTCTTTGCTCT
GTGTGCCTTCCTCCTCATTGCCCTGGCTACCGTCCAGGCAACTCCCGGTG
ATCTGCGCCATGTTCCTGTAGGACACGGAGGACACCCAGTCAATGCTGGC
CACGGACCTGTGGGACACGCTGGTCCTGTTGGACACGGTCCAGTTGTAGG
CCATGGTCCAGTTGTAGGCCATGGTCCAGTTGTGGGACATGGTGTTCATG
GTCATTCTGGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGGAGTCCCAAGCGAGCTCGATATCAAAAT
TACCGCCCCCCGCCCTGCCACTTCATCGCAGTACTGGTTGGTAATTTCAT
TTAAGCATTCCTGCCGACCTTGGAAAGCCATCACAAAACGGCATGGATGG
AACCTTGAAT

UFO12149.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG42500-RB 440 CG42500-RB 99..326 84..311 1140 100 Plus
CG42500-RA 344 CG42500-RA 3..230 84..311 1140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14152325..14152552 311..84 1140 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:01:20 has no hits.

UFO12149.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:48 Download gff for UFO12149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42500-RA 1..245 83..325 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:42 Download gff for UFO12149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42500-RA 1..245 83..325 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:03 Download gff for UFO12149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42500-RA 1..245 83..325 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:03 Download gff for UFO12149.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14152310..14152552 84..325 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:42 Download gff for UFO12149.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9978032..9978274 84..325 97   Minus