UFO12155.5prime Sequence
459 bp (371 high quality bases) assembled on 2012-07-26
> UFO12155.5prime
TAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATA
GCATACATTATACGAAGTTATCAGTCGACATGAGGCTGTTCGCAGTGATT
TTTTGGATAGGCTGGGCCTTTGGCCTAGCGAATTCCAAGAACCCGAGTGC
CGAGACGGGCAGACTGATAGCATCTCTACAAGCTGCTCCGGCTCCGGCGC
CAGCACAAAGTGTGATCTACAAGCTGCCACCACAGCACTACTATCCGCCA
CCACCGCCGCCGCCTCCGCCTCCGCCACAGCACTGCAATTGCCCGCCAGG
TCCACCGGGGCCTCCTGGGACCGCCGGGCTTTACCAGGGAACGCCCTGGT
CCCGCAAGGTCCCCAGGGGACACACCTGGGGTCAAAGGGGCGAAGCGAGG
AAAAGAAAGGGAAAAACGGGGTCCCCTAAGGAACTTACCAGGCCAACCAG
GTGAAACCG
UFO12155.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5225-RA | 1835 | CG5225-RA | 9..373 | 75..455 | 1385 | 93.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17028797..17029018 | 109..331 | 1065 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 18:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 897..964 | 247..309 | 112 | 67.6 | Plus |
UFO12155.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:50 Download gff for
UFO12155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5225-RA | 1..363 | 80..459 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:49 Download gff for
UFO12155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5225-RA | 1..376 | 70..459 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:10 Download gff for
UFO12155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5225-RA | 1..376 | 70..459 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:10 Download gff for
UFO12155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17028697..17028736 | 72..110 | 92 | -> | Plus |
| 3R | 17028799..17029130 | 111..459 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:49 Download gff for
UFO12155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12854521..12854852 | 111..459 | 93 | | Plus |
| arm_3R | 12854419..12854458 | 72..110 | 92 | -> | Plus |
