UFO12158.5prime Sequence
1147 bp (1051 high quality bases) assembled on 2012-07-26
> UFO12158.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCGAATCCGGT
GGCTATCAGAAAATGCCGCCCGGCTGGGACTGCAAATACGATCAAGCAAC
TGGAAATTGCTATTACATAAACTATCTGACGAAGGCCATGCAGCTGGAGG
ATCCGCGCGGCCGCAGTTACAGGCAGTTGCAGAACGAACGCTGTTCCACG
GAGTCGATAGCCTTGCAGCAGTTGGTCAGTCAGCCGCAGACGTCGCACAA
CAGCTCGCCGTACCACGTCCATCCCAGCAACAACTTGACTGCAATTCGGG
CCTTCCAGGAGCGCCAGCAACCCACGCTGCACAACATCTCTACCAGTCCA
TTGTTGTCGGCCTCCTCCAGGGGACACTTGGAAATGTCTTCACCTCTGCC
CTTTCAACGAGCTCGCGTGGGACCGAATCTCTCGCGGCGCTCCACCATTC
AGGAGACCTCGTTCACCACGCAAGCGGAAACGGATGCCGTGGTGACCAAA
ATCCAGAACATGTTCCCCACCGCTGGCGAGAACCATATACGTCTCCTGCT
CAAGCGGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGCATCAG
CACCTTGTCGCTTGCGTATATATTTGCCCATGTGAAACGGGGCGAGAGTT
GTCCATATTGCACGTTAATCAACTGTGAACTCCCCCAGGATTGCTGAACG
AAACTATTTCTCAATAAACCTTAAGAATAGCAAGGTTCACGTAACCGACA
AATCTTGCAATTTGTGTGAACTGCCGAATCCTGATTCTCGAAGCGTA
UFO12158.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10508-RL | 2122 | CG10508-RL | 517..1037 | 86..606 | 2605 | 100 | Plus |
| CG10508-RK | 2986 | CG10508-RK | 517..1037 | 86..606 | 2605 | 100 | Plus |
| CG10508-RJ | 2983 | CG10508-RJ | 517..1034 | 86..606 | 2550 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21212781..21212958 | 430..607 | 890 | 100 | Plus |
| 3L | 28110227 | 3L | 21212224..21212389 | 266..431 | 830 | 100 | Plus |
| 3L | 28110227 | 3L | 21212049..21212158 | 159..268 | 550 | 100 | Plus |
| 3L | 28110227 | 3L | 21210731..21210804 | 86..159 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:01:17 has no hits.
UFO12158.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:48 Download gff for
UFO12158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10508-RH | 497..1028 | 80..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:40 Download gff for
UFO12158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10508-RL | 511..1037 | 80..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:02 Download gff for
UFO12158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10508-RK | 511..1042 | 80..614 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:02 Download gff for
UFO12158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21210725..21210804 | 80..159 | 96 | -> | Plus |
| 3L | 21212050..21212158 | 160..268 | 100 | -> | Plus |
| 3L | 21212227..21212388 | 269..430 | 100 | -> | Plus |
| 3L | 21212782..21212962 | 431..612 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:40 Download gff for
UFO12158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21203825..21203904 | 80..159 | 96 | -> | Plus |
| arm_3L | 21205150..21205258 | 160..268 | 100 | -> | Plus |
| arm_3L | 21205327..21205488 | 269..430 | 100 | -> | Plus |
| arm_3L | 21205882..21206062 | 431..612 | 98 | == | Plus |
