UFO12161.5prime Sequence
1062 bp (930 high quality bases) assembled on 2012-07-26
> UFO12161.5prime
AGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAG
CATACATTATACGAAGTTATCAGTCGACATGGCGCCCTTCTACAAGCGCA
TCTGCCGCAGTCTTTCCAAGCGCTACAAGGAGCCCTCGTTAAGTCTGGAC
AATACAGTCGAGACGCTGCTAATCAAGAATGAGGGGGACTTCATCAGCGT
GGAGCAGGGCAAGGAGCTGGTGGCTCGCAAGCGCAACTCCCAGCAGCTGG
CACATCCGCCGGCCCACTTGCATCACCACACCCAGAACCACGCCCACAAT
CATCACACTCTCCAGCAGCAGCAGCATCAGCAGCAGCAGCAACAACAACA
CAAGCGGGACGAGAATATGAGGCAGCTCCTGGATGTGACCAACACGCTCA
CCATTGAGGAGCTGCGCGATTTTCAGATGCGATATGGCTCACCACATCAC
AGCCGCTCGCAATCGGTGAAGATGCCCGGCAGCAGAGCATCCGGAAGGCC
AAATCAGCTGTGTCTGCCCCAGCAGAGATCCAGGGTGGCTTCCATGCCGA
ATACAGGAGTAGAGGAGGAGTACTACAGACTGCGTCACTTCTCGATCACC
GGCAAGGGTGTGGTAAATCGCGGTGATTCCCTCAAGAGCCGACGCAGTCG
CTCCAACAACAGCGTGGCCAGTTCCAATTCCAGCACGGAGCACCTGACCA
CCCAGCAGCAGCTTTCCGCCCCCGCATCCGTATCCGCTCGAACTTCGCTG
GCTTCCAGCAGGAGAGCAGTACATCCAATCCGGGCAACGGTCCCTACAGG
GTCCTGATGCTGGGAGGTCCTGCGGTGGGCAAGAGTTCGCTCGTCTCGCA
GTTCATGACGTCGAGTACCTGCACGCCTACGACACGAGCATCGATGATGA
GTCCGGCGAGAAGCCGTTTCAGTATACTCAGTGCGAGAGTCCGAGCTGAT
TTCATCGACATGATACACGAAATGACTCTGATGATGCTGAACAACTACGA
TCGCACGTACTGGCGTCATTCTATCGCGCGGACGAGCCAGCTCAGTTGGC
GACCAGGTGCTG
UFO12161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgk1-RA | 1946 | CG44011-RA | 246..1250 | 79..1062 | 4350 | 97 | Plus |
| Rgk1-RB | 5443 | CG44011-RB | 3795..4747 | 131..1062 | 4090 | 96.9 | Plus |
| Rgk1-RC | 3239 | CG44011-RC | 246..1064 | 79..895 | 4045 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19319383..19319688 | 436..131 | 1515 | 99.7 | Minus |
| 2R | 25286936 | 2R | 19318072..19318341 | 800..532 | 1300 | 99.6 | Minus |
| 2R | 25286936 | 2R | 19318398..19318501 | 534..431 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 19317538..19317639 | 897..797 | 445 | 98 | Minus |
| 2R | 25286936 | 2R | 19325198..19325251 | 132..79 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:01:32 has no hits.
UFO12161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:51 Download gff for
UFO12161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgk1-RB | 234..1159 | 73..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:50 Download gff for
UFO12161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgk1-RA | 241..1166 | 73..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:12 Download gff for
UFO12161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgk1-RA | 241..1166 | 73..987 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:12 Download gff for
UFO12161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19318073..19318339 | 534..799 | 99 | <- | Minus |
| 2R | 19318399..19318500 | 432..533 | 100 | <- | Minus |
| 2R | 19319388..19319686 | 133..431 | 100 | <- | Minus |
| 2R | 19325198..19325256 | 73..132 | 95 | == | Minus |
| 2R | 19317542..19317636 | 800..893 | 98 | <- | Minus |
| 2R | 19315247..19315338 | 894..977 | 91 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:50 Download gff for
UFO12161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15202752..15202843 | 894..977 | 91 | <- | Minus |
| arm_2R | 15205047..15205141 | 800..893 | 98 | <- | Minus |
| arm_2R | 15205578..15205844 | 534..799 | 99 | <- | Minus |
| arm_2R | 15205904..15206005 | 432..533 | 100 | <- | Minus |
| arm_2R | 15206893..15207191 | 133..431 | 100 | <- | Minus |
| arm_2R | 15212703..15212761 | 73..132 | 95 | == | Minus |
