UFO12163.5prime Sequence
817 bp (676 high quality bases) assembled on 2012-07-26
> UFO12163.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGCACCAAACAGAGGATT
TGAAATTAATAGATCGGCAGCTATCGAAAATAGCTCGTAAAAGATATAAA
TGGCAGGAAAAGAATAAAACTACGTTTGTTTTATGCACACATGGAATGGT
CAACGACGACGACAAAGTCAAACAATGCAACCCAGAGGAAAAACAACAGC
AACTTTTATCCATGATGCGGGAATTGCCATATTATCCGCCAAGTAACGAG
ATGATAGAGGCGAACACAAACCAGGATTTGAGCGCAAATAATAGTGTGTT
CGGCGATTTTATGAAGACCAAACGCTTGGAGTTTTACAATGTGTGCTCCG
TGATGCAAACGCTGTTAACCATCGACGATCTGTCCAATATGGAGCTATAC
GCCCAACTGATCCAATCTGATGTGCCTGTGCAGCGCGTCTCCAAGCTGAC
ATATAAAATAACTTTCAAGAGCACGCCCGTGAATGCAGAGGACTTTGTTG
CTCCCAATCTAGACCAAGTGGTGCTGGTGCCCAAGCTAGCCTTCTGGCAT
CTCACTACCTAAACATTGGTGCTGCTGCTCGCATCTCATGAGATTTGAGC
CGGCGATCCATGCTCGCATGTGGCTAGTGTGACAGTCAGCAGCACCACTG
TCACGTGCGCTCAGCCGCAACATAAGCGGTCTTGTCAGACAGCGCTTCTA
TGCATTATCCGCTCCGACGCCTACAATCGATACATGTATCCCGCCCTCAT
CTGCCCAGAAGAGCCTG
UFO12163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6967-RC | 3410 | CG6967-RC | 106..868 | 82..815 | 3075 | 95.8 | Plus |
| CG6967-RD | 3474 | CG6967-RD | 340..932 | 252..815 | 2225 | 94.6 | Plus |
| CG6967-RD | 3474 | CG6967-RD | 106..275 | 82..251 | 850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:01:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17063171..17063536 | 252..615 | 1730 | 99.5 | Plus |
| 2R | 25286936 | 2R | 17062964..17063106 | 109..251 | 715 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 3944..3993 | 126..174 | 112 | 72 | Plus |
UFO12163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:52 Download gff for
UFO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 104..866 | 82..815 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:52 Download gff for
UFO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 106..868 | 82..815 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:14 Download gff for
UFO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 106..868 | 82..815 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:14 Download gff for
UFO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17062880..17062906 | 82..108 | 100 | -> | Plus |
| 2R | 17062964..17063106 | 109..251 | 100 | -> | Plus |
| 2R | 17063171..17063763 | 252..815 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:52 Download gff for
UFO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12950385..12950411 | 82..108 | 100 | -> | Plus |
| arm_2R | 12950469..12950611 | 109..251 | 100 | -> | Plus |
| arm_2R | 12950676..12951268 | 252..815 | 94 | | Plus |
