UFO12165.5prime Sequence
819 bp (647 high quality bases) assembled on 2012-07-26
> UFO12165.5prime
AGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAG
CATACATTATACGAAGTTATCAGTCGACATGTTCTCCTCCAGCGCCTCGG
CCGCGTCCACATCCTTCAATCTCGGCCAGCTGCTGCCATTGGCCATCGCC
ATCGGAGTGTTGCATCTGCCGCAGTTTCTGTGTCATGCTGCCTGGACAAC
CAGAACGCCGGAAAGTTTCATTAACGATACGACCACCACCACCACCACCA
CCACCACCACCACAACCAAGACCATGCAAATCCAGGCGATGCAGGTGAAC
TGCAGCCGGGAGCTGCTCGAGATGCATCTGGAGTTGAGCCGTCCCTTTCG
CGGATTACTCTACGCCAAGGACTTTCCGCTGGAGTGTCGCGCACGTGGCA
AGGACTCGACGCGTCTGCATCTGCGCATCCCAACATCGGGTTGCGGAGTG
AGGGCAGAGCCACTGGAGGACGGCAGTCTGGAGTATACGGTGCGTGTGAT
GCTGCAAAAGGAGCAGAAGTTGCGCCAGAGCACCGACATCCTTAGCTCGG
GTGAAATGCCAACTTTCCGGGCCAAATGCGATGGGCCATGCCCACCTTCC
CGGGTGGTTGGCGGACAGGAAAAAGGGGTACCGAATAAAAAAATGCCCAG
GGATGCGCAAGCCCCTTGGGAAGCCGGGCTGGCGGGCATTTTCCAGTTCT
CTCGGGGGCCCCTTTTGTCCTTCAATTAAAAAACAACGGGAGAAAACCCC
CCCCTTTAAGAATTGGTTAAAATTGGGGGGGCCCCAAGGGCCCGGATCCC
GGGGGGGGGGGCCCCCCCC
UFO12165.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyr-RD | 2378 | CG15335-RD | 648..1158 | 77..592 | 2440 | 98.8 | Plus |
| cyr-RC | 2555 | CG15335-RC | 648..1158 | 77..592 | 2440 | 98.8 | Plus |
| cyr-RB | 2452 | CG15335-RB | 545..1055 | 77..592 | 2440 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8127120..8127607 | 565..77 | 2380 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:01:38 has no hits.
UFO12165.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:52 Download gff for
UFO12165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyr-RB | 538..1065 | 69..606 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:54 Download gff for
UFO12165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyr-RB | 538..1065 | 69..606 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:15 Download gff for
UFO12165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyr-RB | 538..1065 | 69..606 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:15 Download gff for
UFO12165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8127087..8127614 | 69..606 | 97 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:54 Download gff for
UFO12165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8021120..8021647 | 69..606 | 97 | == | Minus |
