UFO12166.5prime Sequence
1012 bp (960 high quality bases) assembled on 2012-07-26
> UFO12166.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGGTGAAGATCGAGGAAGG
TCTGCCGTCCAGCGAGATTAGCGCTCACAGTCTCCACTTTCAGCACCATC
ACCACCCACTGCCGCCCACCACTCACCATTCCGCGCTCCAAAGTCCCCAT
CCCGTCGGGCTGAATCTCACCAATCTAATGAAAATGGCCAGGACACCACA
TTTGAAGTCCAGCTTTTCCATTAATTCCATTCTACCCGAGACTGTGGAGC
ATCACGACGAGGATGAGGAAGAGGATGTCGAGAAGAAATCACCAGCGAAA
TTTCCGCCCAACCATAATAATAACAATCTGAATACCACGAACTGGGGATC
GCCAGAGGATCATGAGGCGGAAAGCGATCCCGAATCGGATCTCGATGTGA
CCTCCATGTCACCGGCTCCCGTTGCGAATCCCAATGAAAGCGATCCGGAT
GAAGTCGACGAGGAGTTCGTGGAGGAGGATATCGAATGTGATGGGGAGAC
AACCGATGGCGATGCGGAAAATAAATCGAACGATGGCAAGCCGGTGAAGG
ATAAGAAAGGCAACGAAAAGCCACCTTACAGCTAAATGCCCTAATCATGA
TGGCCATTCGTCAGAGTTCCGAGAAGCGTCTAACCCTGAATGGCATCTAC
GAGTACATAATGACCAATCATCCATACTACCGGGACATCAAACAGGGCTG
GCAGAACTCCATAAGACATAACTTGAGCCTGAATAAGTGTTTCGTCAAGG
TGCCAAGACACTATGATGATCCTGGCAAGGGCAACTACTGGATGTTGGAT
CCCTCGGCGGAAGACGTATTCATTGGCGGATCGACGGGGAAGCTGAGGAG
GACACCACGGCCGCCTCTCGCTCCGACTTGTCAGTCTTCAAGAGAATCCC
TGATAGGACCCTTGTTCCCGGGAACTGGCTGCCTATCCGCAGTTTGGGAC
AATTTATTACTT
UFO12166.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slp2-RA | 2346 | CG2939-RA | 358..1287 | 80..1010 | 4375 | 98.4 | Plus |
| slp1-RA | 1425 | CG16738-RA | 476..748 | 627..898 | 340 | 77 | Plus |
| croc-RA | 2347 | CG5069-RA | 559..678 | 683..802 | 180 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3837197..3838114 | 80..997 | 4235 | 98.4 | Plus |
| 2L | 23513712 | 2L | 3826162..3826422 | 638..898 | 315 | 74.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:01:41 has no hits.
UFO12166.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:53 Download gff for
UFO12166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp2-RA | 356..1287 | 80..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:56 Download gff for
UFO12166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp2-RA | 358..1289 | 80..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:18 Download gff for
UFO12166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp2-RA | 358..1289 | 80..1012 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:18 Download gff for
UFO12166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3837197..3838128 | 80..1012 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:56 Download gff for
UFO12166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3837197..3838128 | 80..1012 | 98 | | Plus |
