UFO12167.5prime Sequence
1149 bp (1039 high quality bases) assembled on 2012-07-26
> UFO12167.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGCGCAATATACTGCTT
TGTGAAAATATGACCAAGGTGCAAAAAGAGGTGCGATGCGACCATTGCGG
CACAAGCCAAGGGTCCAAGAGTGTTTTTTCAGGTCAGAAGGTGTTCCTGG
GCAGGAAAATAACAGACGTACTGGAGACCATCACCCACAGAAGCATCCCA
TCATCCTTGCCCATCAAGATATGCTTCGTCTGCACCTCCACATTCATGTC
CAGCGCGGCACTAATCGAGAAGGTCCGCGAGACGGTGGACAGGGTACAGG
AGCAGCCCGCCAAGAAGACTAAGGTAGCGGAAATAGAGGAGCCATCGACA
CAGGAAAGCGATAAGAAGGCGGTTAAGGTGCCAAAAAAGAACACCACCCT
CCGTCAGCGCAGCAAGTCCATAGCAGCTTTCCCGCCAAGCTTTGTGAATG
GAGCTAATACTAATACAGAAATCGAGATCATTAGTGCTTCGCCCAAGAAA
CTCGATAAGACCCCTAAAAAGCAGATATCTCGACTCTTCGAGGATAATCT
TAACGATTCGGTTAAGCTGACGCCCGCCAAAGAGGTGTCGTCTACTAAAA
AGGCTTTCCTTAATCTCTTTGGCAACGGCGGCAACGATGCCATCGAAGTA
CTGACCGAGAGCGAGGAAGAGGAGGACTCGGATAAAGGTCCTATCACCAT
TAACACAAATAACTTTCAGTGTCCAGAGTGCGAATTTCACGCAAAGTTTC
CCAAACCGTACAAGGAGCATCTGCAGAAGGAGCACGGTCTTCAAAGACCA
CGCATATACCCCTGTACCTTGTGTATTAAGACTTTTGGAGTGCTTAAGAC
TTTGAAAAATCATTTAAGGGACACTCACTCACGCACTTTTGAAGCGAGGC
TAAGACTAACGCGACGAAAGCAAGAAAAGAGCTAAGTCAGGGCCAGAATA
AAATTGACGCAAGCAAGAGACCATGCTGTGAGTCAAGAGAGCTAAAGAAA
AAGTCAAAGAGAAAGAACGAATCATGTAATGTGGACAAGTGTGACGATTC
GACGACATGGACCACAAAGTCAGATGTAGAACCGACGAATCAGGCTACC
UFO12167.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2199-RB | 2576 | CG2199-RB | 13..978 | 83..1036 | 4530 | 98.6 | Plus |
| CG2199-RC | 2640 | CG2199-RC | 92..1042 | 98..1036 | 4440 | 98.4 | Plus |
| CG2199-RA | 2846 | CG2199-RA | 298..1248 | 98..1036 | 4440 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1341087..1341861 | 1012..245 | 3555 | 98.5 | Minus |
| 3L | 28110227 | 3L | 1341928..1342074 | 244..98 | 720 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:01:44 has no hits.
UFO12167.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:54 Download gff for
UFO12167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RB | 11..983 | 80..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:57 Download gff for
UFO12167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RB | 11..983 | 80..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:19 Download gff for
UFO12167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RB | 11..983 | 80..1045 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:19 Download gff for
UFO12167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1341087..1341861 | 245..1012 | 98 | <- | Minus |
| 3L | 1341928..1342069 | 103..244 | 100 | <- | Minus |
| 3L | 1342372..1342391 | 83..102 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:57 Download gff for
UFO12167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1341087..1341861 | 245..1012 | 98 | <- | Minus |
| arm_3L | 1341928..1342069 | 103..244 | 100 | <- | Minus |
| arm_3L | 1342372..1342391 | 83..102 | 100 | == | Minus |
