UFO12168.5prime Sequence
598 bp (500 high quality bases) assembled on 2012-07-26
> UFO12168.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGACGCGCTACAAGCAGAC
CGAATTCACGGAGGACGACTCGAGTTCCATCGGCGGCATTCAATTGAACG
AAGCGACCGGCCATACGGGCATGCAGATACGCTACCACACCGCCCGGGCT
ACATGGAATTGGCGCTCGAGAAACAAGACGGAGAAATGGCTGCTCATCAC
GACTTTTGTGATGGCCATCACGATCTTTACGCTGCTCATCGTCCTTTTCA
CAGATGGAGGCAGCAGCGATGCGACCAAGCACGTCCTTCACGTCCAGCCG
CACCAAAAAGATTGTCCTTCCGGCAATGAGCTTCCTTGCTTGAACAAGCA
CTGCATCTTCGCCTCGAGCGAGATCCTTAAATCGATCGATGTGACCGTGG
ATCCGTGCGATGACTTCTATGGATATTCCTGCAATCCATGGAATCAAGGA
ACACCCCCATTCCCGAGGGGGAAATCCCACGTTGGGGTACGTTCCGCCAA
CTGGGACCAAATGAACCAATTTGAAATAACGTACGTAATGGGAGAAAC
UFO12168.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nep3-RC | 4528 | CG9565-RC | 305..786 | 81..568 | 2185 | 97.3 | Plus |
| Nep3-RB | 3546 | CG9565-RB | 167..648 | 81..568 | 2185 | 97.3 | Plus |
| Nep3-RA | 3537 | CG9565-RA | 158..639 | 81..568 | 2185 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19964781..19964944 | 197..360 | 820 | 100 | Plus |
| X | 23542271 | X | 19965004..19965126 | 359..481 | 615 | 100 | Plus |
| X | 23542271 | X | 19963955..19964072 | 81..198 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:01:46 has no hits.
UFO12168.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:54 Download gff for
UFO12168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep3-RA | 158..630 | 81..559 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:58 Download gff for
UFO12168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep3-RA | 158..630 | 81..559 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:20 Download gff for
UFO12168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep3-RA | 158..630 | 81..559 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:20 Download gff for
UFO12168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19965006..19965126 | 361..481 | 100 | -> | Plus |
| X | 19963943..19964071 | 69..197 | 96 | -> | Plus |
| X | 19964782..19964944 | 198..360 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:58 Download gff for
UFO12168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19859039..19859159 | 361..481 | 100 | -> | Plus |
| arm_X | 19857976..19858104 | 69..197 | 96 | -> | Plus |
| arm_X | 19858815..19858977 | 198..360 | 100 | -> | Plus |
