UFO12173.5prime Sequence
602 bp (450 high quality bases) assembled on 2012-07-26
> UFO12173.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAATCCACATGCTTAGAGCTAGGCGCA
CTATAAGTATTTTCATTGAGGAACAGACGGGCCTTACCCTCACACCTGAA
ATGCTGTTGTCCACCTCGGAATCATCGACCCACAGTGCCTCCGAGGTCGC
CGGACGACTGCAGGTCGACGTGCGTACCGGCCTCAAATGGACAGAGGCCA
AGTATCGTGCCAAGATCATCGGGCATAACGAGCTGCTGCTCGTGGCGGAG
GATCCGACATGGAAAAAGTACATTGAGCAGTTTAAGAACCCGCTAATTCT
GCTGCTTCTTGGTTCTGCTCTGGTGTCCGTAATCATGAAGCAGTTTGACG
ACGCCGTGAGCATAACCATTGCCATCCTAATTGTGGTCACGGTGGCCTTT
ATCCAGAAGTACCGCTTCCGAGAAGAGTCTGGAGGAGCTTAACAAAGCTG
GTGGCCCCCTGAATGCCACTGCCCGGCGGGAAGGGCCGTCTAGAAACATT
TCGTGGGAAGGGGAACTGGTTTCCGGGGGAACTATTGCACCCCAACGTGG
GG
UFO12173.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SPoCk-RC | 3716 | CG32451-RC | 194..705 | 82..601 | 2175 | 95.6 | Plus |
| SPoCk-RD | 3742 | CG32451-RD | 258..731 | 120..601 | 1970 | 95 | Plus |
| SPoCk-RG | 3937 | CG50-RG | 283..752 | 124..601 | 1965 | 95.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22777108..22777504 | 124..523 | 1805 | 98.5 | Plus |
| 3L | 28110227 | 3L | 22775327..22775371 | 82..126 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:01:53 has no hits.
UFO12173.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:56 Download gff for
UFO12173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPoCk-RC | 185..657 | 75..556 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:03 Download gff for
UFO12173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPoCk-RC | 190..662 | 75..556 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:25 Download gff for
UFO12173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPoCk-RC | 190..662 | 75..556 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:25 Download gff for
UFO12173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22775323..22775371 | 75..126 | 92 | -> | Plus |
| 3L | 22777111..22777534 | 127..556 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:03 Download gff for
UFO12173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22768423..22768471 | 75..126 | 92 | -> | Plus |
| arm_3L | 22770211..22770634 | 127..556 | 96 | | Plus |
