UFO12176.5prime Sequence
514 bp (284 high quality bases) assembled on 2012-07-26
> UFO12176.5prime
GGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGC
ATACATTATACGAAGTTATCAATCCACATGTCCGCCGTGAGCCCCAACTC
TTGTGTGGAGACGCCCAAGGCGCCGGAATGGCTATCGAAGCTGGAGAGTC
GTCGGGAGCAACTGAAACGCTCCAAGCTGGGTCACGAAGCCGGAGCTGGA
GCCCCCTGTGCCGAGTGCAAGGACAAATGTCCGGGGCTGGACTTGCACTT
CTGGCGCAAGGTTTGCCGCAACTGCAAGTGCCCCAAGATTCACCATGTGT
GTCCGGACGACGATGATGCCACTGGCTGGGCGCATTTCGAGAATCTGGGC
CAGATTAAGGCCAAACCGGCGTATATCAAAATCAAAGCTCTGGCCAGTCA
GCCCGTTCAGCTGGAGTGGGTGCCGCCAAATGCTGCTCCGGATGTGGTCA
CAAATTATATGGAGAACTGGGGACCGCCCAAATACCTGGTGGCTGGAAGC
GAATCCGCGCTCCA
UFO12176.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:01:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tes-RA | 3102 | CG6522-RA | 111..545 | 78..512 | 2010 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17468773..17469067 | 372..78 | 1415 | 98.6 | Minus |
| 2R | 25286936 | 2R | 17468563..17468702 | 512..373 | 545 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:01:58 has no hits.
UFO12176.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:57 Download gff for
UFO12176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6522-RA | 99..544 | 70..513 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:07 Download gff for
UFO12176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tes-RA | 100..545 | 70..513 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:30 Download gff for
UFO12176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tes-RA | 100..545 | 70..513 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:30 Download gff for
UFO12176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17468773..17469078 | 70..372 | 97 | | Minus |
| 2R | 17468562..17468702 | 373..513 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:07 Download gff for
UFO12176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13356067..13356207 | 373..513 | 95 | <- | Minus |
| arm_2R | 13356278..13356583 | 70..372 | 97 | | Minus |
