UFO12177.5prime Sequence
496 bp (431 high quality bases) assembled on 2012-07-26
> UFO12177.5prime
GGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGCA
TACATTATACGAAGTTATCAGTCGACATGTCCTCGCTGGACGCACGCAAC
AACTCGGCGATGATGAAGCGCGCCGAGCAGCTGAAGCGCTGGGAGGAGTC
GGACACAAACCGCGCCGCCCCCACCCCCCGGCACGAGCACGGCCGCAGGA
TCAAGTTCAGCTCCGGCTGTGTCTTCCTCGCCGCCTGCCTTTCCGGCGAC
AAGGACGAGGTCGTCCAGCTGCTCGACCAGGGCGCCGACATCAACACCGC
CAACGTCGATGGACTCACCGCCCTGCACCAGGCGTGCATAGACGACAATC
TGGACATGGTGGAGTTTCTAGTGGAGCGAGGTGCCGACATAAAACCGCCA
GGATAACGAGGGCTGGGCCGCCACTGCACGCCACTGCCTCCTGCGGATTT
GGGAACCTAGCTCGGTATTTGGTGGGAAAATGGGCCTTAAGGGGGC
UFO12177.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mbs-RQ | 4482 | CG32156-RQ | 494..897 | 77..483 | 1900 | 98.3 | Plus |
| Mbs-RP | 4003 | CG32156-RP | 494..897 | 77..483 | 1900 | 98.3 | Plus |
| Mbs-RO | 5520 | CG32156-RO | 518..921 | 77..483 | 1900 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16053306..16053561 | 77..332 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 16062128..16062243 | 329..446 | 475 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:02:01 has no hits.
UFO12177.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:58 Download gff for
UFO12177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RH | 465..878 | 67..483 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:09 Download gff for
UFO12177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RO | 508..921 | 67..483 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:31 Download gff for
UFO12177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RO | 508..921 | 67..483 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:31 Download gff for
UFO12177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16053296..16053560 | 67..331 | 98 | -> | Plus |
| 3L | 16062131..16062243 | 332..446 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:09 Download gff for
UFO12177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16055231..16055343 | 332..446 | 97 | -> | Plus |
| arm_3L | 16046396..16046660 | 67..331 | 98 | -> | Plus |
