UFO12178.5prime Sequence
367 bp (304 high quality bases) assembled on 2012-07-26
> UFO12178.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGCGATTTTCTCTGTTTA
CCATGCCCCACAATGCAGCTAAATCGGTCGAGGAGCGCAACATACCATGG
AGTCAGCAAGTCGATGAGGCCTCGTACGAAAATCTATCCTCTCCCACTCA
CGATGAAGTCTCTGGCAATGACAACTCCATGCAATTCCAATATCCGCCGT
TCAACTTCAAGGAGAATTGCAACACTCCATGGAACAATATGAACAAGGGC
CCGAAAGGGCGAAACGCCAACCATGATTCATAATAGAAAGACATTGTTCA
TAAGTATTTCCCCAATA
UFO12178.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6422-RB | 2832 | CG6422-RB | 296..572 | 82..367 | 1200 | 96.5 | Plus |
| CG6422-RD | 2862 | CG6422-RD | 360..602 | 116..367 | 1030 | 96 | Plus |
| CG6422-RC | 2616 | CG6422-RC | 114..356 | 116..367 | 1030 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25038420..25038553 | 215..82 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 25038232..25038319 | 301..214 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:02:04 has no hits.
UFO12178.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:59 Download gff for
UFO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6422-RB | 292..561 | 82..358 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:12 Download gff for
UFO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6422-RB | 296..565 | 82..358 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:32 Download gff for
UFO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6422-RB | 296..565 | 82..358 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:32 Download gff for
UFO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25038207..25038318 | 215..331 | 94 | <- | Minus |
| 3R | 25038421..25038553 | 82..214 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:12 Download gff for
UFO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20863929..20864040 | 215..331 | 94 | <- | Minus |
| arm_3R | 20864143..20864275 | 82..214 | 100 | | Minus |
