UFO12179.5prime Sequence
1121 bp (1033 high quality bases) assembled on 2012-07-26
> UFO12179.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGGCAGAACCCCGTCCCGG
CGGCTACAACTACAAGACATTATTATGCAGAAACATTCCGGAGCTATTTT
TGGACAAATATGTGGCGCGTTCGCACTTTGGACGTTTTGGAACCCTCGTA
AACTTCGTCCTGCGTCCGCGGCGAATGACCTGCACCGTAAGCTATGCCAG
CGAGGACGAGGCGGCGCGGGCGCTTCTCGATGGCGCCAGCTTTCAGGGTC
ACCTGTTTGATATATCCTATGCTGATAACGAGACGGCGCCGGCACAGAAA
ACGGAGGAGTGGGTGGATCCTGACATTCAGGCGGAGTTGAGTGCACTGCA
GTCGGGCTGGCGCAATGAGTATGGGTCGGGCAAGCCGATAAAAAAACCAC
AAAATGGCAGCAGTGGTAGCGGTGGCAGTTCAATGCTGCCTGCCATACCA
GTTGGGCCCGCAACGGCGCCGGTGAGCAGAGATCGTACGCCTGCCCAGCT
CAGGGATCTTGAGAACATGATGCGCAGACCCGCCCATACAAGCGAGGAGA
AGTTCAGCGTGCTGGATGCCCGCGATAAGCTGCTCCGGTTGAACCGAACG
CAACACAAGCTGTCCGGTGCCACCCAGGGTCACTGCGCCGATATGTGTCC
GGAAAAGGAGCGCGTGCTGAGAGAATTCCAGCGCCAGGTAGCCTACTATG
AACTACAACCGGGCTCCGATGAGCTAATCTGTCACGAAAGAGCCCTGAAG
CAGTACTCGCGCAGCAGTGCCGACCAGGAGACGCCACTGCCGCATGAACT
GCGCAATGAGACTGCCCTGCACATGACCATGAGCTATCTAATGCATGAGA
TCATGGACATTAGCGAGCGCCAGGATCCGCAAGCCATATGGGCGATTGGT
TCCACTTCGTTTGGGATCGCACGAGTCCATCGAAAGAGATCACCCAGCAG
AGCTATGCTCTCTGGGCGCCTGTGAGCTGTGAGCATTGCGCCTGCTTCAC
ATCATTGCGCCGCCCGGTCTGTGACGACGGATCAAGCGTCTTGGACAGCA
AGGAATCAAGCCCGGATCTAA
UFO12179.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| xmas-2-RA | 5073 | CG32562-RA | 93..1124 | 81..1102 | 4695 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17158207..17159106 | 1019..125 | 4255 | 99.2 | Minus |
| X | 23542271 | X | 17159171..17159214 | 124..81 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:02:07 has no hits.
UFO12179.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:47:59 Download gff for
UFO12179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| xmas-2-RA | 81..1104 | 70..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:14 Download gff for
UFO12179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| xmas-2-RA | 81..1104 | 70..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:34 Download gff for
UFO12179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| xmas-2-RA | 81..1104 | 70..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:34 Download gff for
UFO12179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17158139..17159106 | 125..1083 | 98 | <- | Minus |
| X | 17159171..17159214 | 81..124 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:14 Download gff for
UFO12179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17052172..17053139 | 125..1083 | 98 | <- | Minus |
| arm_X | 17053204..17053247 | 81..124 | 100 | == | Minus |
