UFO12187.5prime Sequence
1087 bp (1004 high quality bases) assembled on 2012-07-26
> UFO12187.5prime
TAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATA
GCATACATTATACGAAGTTATCAGTCGACATGTACTCGTTTTTTGATCAT
TCAAAAAATCAACCAGATCTTACACCAATGGGGTCCTTCTGGCAGCAACA
TGTGGCCACTCCTAGTAGTTCAACTCCATTCGATTCACCATTTTTTTCGG
CAACACACGGCCTTGTGCAGACTCACCCGTCTATAGGTGGAAGCCACTCT
GGGCCCGCTCCATTAAATGGCAATAGCCTTGGGTCTGGAGCTCCATCCTC
AATCCTAGCTGGTACTAAGCCAGCCCTAACCGCTGGAAGCGGTTACCTAA
ACTCACGCGGGAGTCTACCGACCTCTGCACGTTATCCAGCTAATAAGATC
ACAGGAACCGTCGTGGAACCCAACCCAAAATCTCCATTCCGCCACTTAGA
TTTCTCTACTAGTGCAACTGCCGAGCTGCGGCGCAATCCTGCGCTATCTG
CTCCTGATGAATGTGCACGCGCTTGTCGCGAAGGCGAGCCTCCGAGAATT
TGCTACTATCATTTTACGTTGGAATACTACACAGTATTGGGAGCTGCGTG
TCAAGTATGTACTCCAAACGCAACGAATACGGTTTGGAGCCATTGTCAGT
GTGTCTTAGCTGATGGAGTTGAACGTGGAATTCTAACTGCGAATCGTATG
ATACCCGGGCCAAGCATTCAAGTGTGTGAAAACGACAAAGTCGTTATTGA
TGTGGAGAACCATATGGAGGGAAAGGGAAGTAACTATACACTGGCACGGT
ATATGGCAACGTGGATCGCAGTATTATGATGGGGTGCCCTTCGTTTACTC
AAGTGCCCCATTCAGCAAGATAATACCTTCCCGTTTATCAGTGGACAGGA
AAACGCTGGGACACATTTTTGGCATGCTCATACCCGGTCTAACAGAAACT
AGATGGACTCTAACGGCAGCGTCGTGTTCGAACAGCACATTCAAGGACCC
TAACTCTCCCAATTATCTGATTTTGATCAACCAACCATATATGCTTATCA
AGATTGGCTGCTTGAAAATGCATAGAGAGATATTCCT
UFO12187.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| laccase2-RF | 2869 | CG42345-RF | 298..1296 | 80..1083 | 4365 | 96.6 | Plus |
| laccase2-RG | 3645 | CG42345-RG | 339..1312 | 105..1083 | 4240 | 96.6 | Plus |
| laccase2-RE | 3645 | CG32838-RA | 339..1312 | 105..1083 | 4240 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5423750..5424239 | 105..594 | 2450 | 100 | Plus |
| 2R | 25286936 | 2R | 5435652..5436024 | 595..976 | 1435 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:02:15 has no hits.
UFO12187.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:48:01 Download gff for
UFO12187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42345-RF | 35..980 | 70..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:20 Download gff for
UFO12187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laccase2-RF | 291..1236 | 70..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:41 Download gff for
UFO12187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laccase2-RF | 291..1236 | 70..1027 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:41 Download gff for
UFO12187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5423750..5424239 | 105..594 | 100 | -> | Plus |
| 2R | 5435652..5436075 | 595..1027 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:20 Download gff for
UFO12187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1311255..1311744 | 105..594 | 100 | -> | Plus |
| arm_2R | 1323157..1323580 | 595..1027 | 94 | | Plus |
