UFO12190.5prime Sequence
419 bp (352 high quality bases) assembled on 2012-07-26
> UFO12190.5prime
AGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAG
CATACATTATACGAAGTTATCAGTCGACATGGCCAGCACCACTGGAAGTG
CCCCCAGCCTGGGACCCCCCCAGAGCGGGAGTGGTGGCTCTGGCACATTG
GAGGGCACGCTAAGCAAGTGGACGAATGTGATGAAGGGCTGGCAGTACCG
CTTCTTCGTTCTGGACGAGAATGCTGGACTGCTGTCCTATTACACGTCGA
AGGATAAGATGATAAAGGGCGTGAGGCGCGGTTGTGTTCGTTTAAAGGAT
GCGCTAATCGGAATCGACGACCAGGGAGGACAACACATTCACAATCACTG
TGGACCCATAAGACCTTCCACTTTCAGCGCGAAACAACGAGGAGCGGGAG
CAGTGGGTGCGCCCGCCTG
UFO12190.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1513-RA | 3827 | CG1513-RA | 288..626 | 79..419 | 1595 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9891235..9891402 | 246..79 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 9889607..9889736 | 377..246 | 560 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:02:18 has no hits.
UFO12190.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:48:02 Download gff for
UFO12190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1513-RA | 273..615 | 74..419 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:21 Download gff for
UFO12190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1513-RA | 284..626 | 74..419 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:42 Download gff for
UFO12190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1513-RA | 284..626 | 74..419 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:42 Download gff for
UFO12190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9889083..9889124 | 378..419 | 93 | <- | Minus |
| 2R | 9889607..9889735 | 247..377 | 98 | <- | Minus |
| 2R | 9891235..9891406 | 74..246 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:21 Download gff for
UFO12190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5776588..5776629 | 378..419 | 93 | <- | Minus |
| arm_2R | 5777112..5777240 | 247..377 | 98 | <- | Minus |
| arm_2R | 5778740..5778911 | 74..246 | 98 | | Minus |
