UFO12193.5prime Sequence
642 bp (218 high quality bases) assembled on 2012-07-26
> UFO12193.5prime
TAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATA
GCATACATTATACGAAGTTATCAATCCACATGGGCCTGCTATATGCGCTG
CGCGTGAGGATCATGAACTTCATGATTTTCTTCCTCCTCATCATCCTAAT
GCCCGGTCTGCCGCCGCGCACCACCTTCCCCTTCAAGGACTATATTGTGA
CCCCGCCCAAAGACCTGAAGGGTGCGCTGGAATCGAACTTTCACCTGGAG
GGAGCGGAGCGACTGCTGGAGGGGCGGGTCTACCGCCCGGAGTGCCTGAT
AACCCGCAACAACAAGATCTACTCCGGCCTCCACGGGGGTGAGGTCATCC
TGCTAACGTCCAACCATGTCACGCATGTCACCAAGATCGGCCAGCCCTGC
TAGGACATCTGCGAGGACTACCGGTGCAGACGTCCGCTGGGACTGTCCTT
TGATACTTTGGGCAAGAATCCTCGTGCTTCACCCACGCCTTTCTAAAGTG
CCTTGGGGGAAGGTTGAAACTTCGGGCCCCCCAATAAAAAAAGAAATTCT
GGGGGGGGCCCCCGGCCCGGCCCAGGGAACTTTTTGGCCGGGGAAAAAAC
CCCCGGAACCCCGCCCCCCGGAAAAAAAAATTTTTTCCCCCC
UFO12193.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmu-RA | 2360 | CG3373-RA | 161..538 | 79..456 | 1665 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27289115..27289319 | 196..400 | 905 | 96.1 | Plus |
3R | 32079331 | 3R | 27288929..27289045 | 79..195 | 585 | 100 | Plus |
3R | 32079331 | 3R | 27289380..27289434 | 402..456 | 185 | 89.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:02:24 has no hits.
UFO12193.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:48:04 Download gff for
UFO12193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmu-RA | 148..552 | 65..473 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:25 Download gff for
UFO12193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmu-RA | 150..554 | 65..473 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:44 Download gff for
UFO12193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmu-RA | 150..554 | 65..473 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:44 Download gff for
UFO12193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27288918..27289045 | 65..195 | 96 | -> | Plus |
3R | 27289115..27289320 | 196..401 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:25 Download gff for
UFO12193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23114640..23114767 | 65..195 | 96 | -> | Plus |
arm_3R | 23114837..23115042 | 196..401 | 95 | -> | Plus |