Clone UFO12193 Report

Search the DGRC for UFO12193

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:121
Well:93
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptHmu-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12193.5prime Sequence

642 bp (218 high quality bases) assembled on 2012-07-26

> UFO12193.5prime
TAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATA
GCATACATTATACGAAGTTATCAATCCACATGGGCCTGCTATATGCGCTG
CGCGTGAGGATCATGAACTTCATGATTTTCTTCCTCCTCATCATCCTAAT
GCCCGGTCTGCCGCCGCGCACCACCTTCCCCTTCAAGGACTATATTGTGA
CCCCGCCCAAAGACCTGAAGGGTGCGCTGGAATCGAACTTTCACCTGGAG
GGAGCGGAGCGACTGCTGGAGGGGCGGGTCTACCGCCCGGAGTGCCTGAT
AACCCGCAACAACAAGATCTACTCCGGCCTCCACGGGGGTGAGGTCATCC
TGCTAACGTCCAACCATGTCACGCATGTCACCAAGATCGGCCAGCCCTGC
TAGGACATCTGCGAGGACTACCGGTGCAGACGTCCGCTGGGACTGTCCTT
TGATACTTTGGGCAAGAATCCTCGTGCTTCACCCACGCCTTTCTAAAGTG
CCTTGGGGGAAGGTTGAAACTTCGGGCCCCCCAATAAAAAAAGAAATTCT
GGGGGGGGCCCCCGGCCCGGCCCAGGGAACTTTTTGGCCGGGGAAAAAAC
CCCCGGAACCCCGCCCCCCGGAAAAAAAAATTTTTTCCCCCC

UFO12193.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
Hmu-RA 2360 CG3373-RA 161..538 79..456 1665 96 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27289115..27289319 196..400 905 96.1 Plus
3R 32079331 3R 27288929..27289045 79..195 585 100 Plus
3R 32079331 3R 27289380..27289434 402..456 185 89.1 Plus
Blast to na_te.dros performed on 2014-11-28 18:02:24 has no hits.

UFO12193.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:48:04 Download gff for UFO12193.5prime
Subject Subject Range Query Range Percent Splice Strand
Hmu-RA 148..552 65..473 93   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:25 Download gff for UFO12193.5prime
Subject Subject Range Query Range Percent Splice Strand
Hmu-RA 150..554 65..473 93   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:44 Download gff for UFO12193.5prime
Subject Subject Range Query Range Percent Splice Strand
Hmu-RA 150..554 65..473 93   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:44 Download gff for UFO12193.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27288918..27289045 65..195 96 -> Plus
3R 27289115..27289320 196..401 95 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:25 Download gff for UFO12193.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23114640..23114767 65..195 96 -> Plus
arm_3R 23114837..23115042 196..401 95 -> Plus