UFO12194.5prime Sequence
1022 bp (858 high quality bases) assembled on 2012-07-26
> UFO12194.5prime
TAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATA
GCATACATTATACGAAGTTATCAGTCGACATGATCATGGAAGGGCTTGAA
ACCCTGGTGGCGCCAACGCATCACGCATTCCTGCTCACCGAGACGGCCGC
GGCCGCTCACTTCAATGTGCTGAGCTTCGACACCTGTCTGTTCAAGACGA
GCACGGCGGCCCAGAGCAGCGGCAGTCCGTCGACGGCCACCTACCTGAGT
CCCGCCCAATTCGGAGGCAGTCATCACGGCGGCGCCAGCACCAGCAGCAA
CTCCCTGAACTCCTCCTCGACCGCATCCTCGTCGTCCACGTCGTCCTCGC
TGCTCCACTACACCACAGCTTCGGCAGCTGCCGCTGCTGCAGCCGCCGCT
GCTGCATCCGCCAACAATTCAGTGCTTCGTGCCCGCAATCAGACGGCCAC
GCCCACCCAGGGCGGTAGTCCGGGACACGTGGCCGTACAGCCCAGCGCCA
CCGCCAGCAGCGGACGCAGTTCGGCCTCCCATCTCAGCCTGCTGAACACC
AGTGGCCAGCATAGTCCCACCTCATCGGCCGTCGAGCAGTGGAGGCCCAC
AAGCAGCTGATCGAGGCGCTGCCGGGCGACCTCAACACACCGGTGACCAC
GTCCAGCGATATTCCCTCGTTCTTCGGACCCACCACCGTCGTGGAGCCAC
CGCCCATTACTGGTTCCATCGAATCCGAGGATCTGTCTTTGGAACCCCAG
GTGATATCTGTGGCCAGTCCCGGTGTTGTCACATTGCAGTCCGTGGAAGG
AGGAGCGCAGCACTCCGCCAGCATTGGGCCATGTTCAAGGAAGATCAGCA
CGCGATGAACGCAGCAGCTGGCGCAGCAGCGCGCAGCACAGCAGCAACAC
TACAGCAGCAGCAGCACCAGCAACACCTCCCTCCCGCAACTGGGCGTCTG
CAGGACGATGGTCTCCGCCCTCAATAGCTGGCACAGCTGGGTCTGCCAGT
CCGAAAAGAACATGTCCAGCGC
UFO12194.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sr-RC | 3976 | CG7847-RC | 554..1512 | 79..1020 | 4125 | 96.8 | Plus |
| sr-RE | 6377 | CG7847-RE | 554..1318 | 79..844 | 3715 | 99.2 | Plus |
| sr-RD | 5757 | CG7847-RD | 1768..2532 | 79..844 | 3715 | 99.2 | Plus |
| sr-RE | 6377 | CG7847-RE | 1894..2079 | 850..1020 | 445 | 88.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18127021..18127657 | 79..714 | 3135 | 99.8 | Plus |
| 3R | 32079331 | 3R | 18130394..18130524 | 712..844 | 520 | 96.2 | Plus |
Blast to na_te.dros performed 2014-11-28 18:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..684 | 368..411 | 121 | 75 | Plus |
UFO12194.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 09:48:00 Download gff for
UFO12194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sr-RC | 540..1481 | 70..997 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:16 Download gff for
UFO12194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sr-RC | 540..1481 | 70..997 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:36 Download gff for
UFO12194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sr-RC | 545..1486 | 70..997 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:36 Download gff for
UFO12194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18127012..18127655 | 70..712 | 99 | -> | Plus |
| 3R | 18130395..18130529 | 713..847 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:16 Download gff for
UFO12194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13952734..13953377 | 70..712 | 99 | -> | Plus |
| arm_3R | 13956117..13956251 | 713..847 | 94 | -> | Plus |
