UFO12201.5prime Sequence
1072 bp (934 high quality bases) assembled on 2012-09-06
> UFO12201.5prime
AGTCGACCTCAATTCCGAGATTAATCAACGATTCCTGGCCCGCGGCTCGC
AGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGGC
ATGAATGCAGCCGTGCGAGCCTGTGTCCGTATGGCCATCTATTTGGGCTG
CAAGGTCTACTTCATTCGTGAAGGCTACCAGGGCATGGTGGATGGTGGCG
ACTGCATCCAGGAAGCCAACTGGGCCTCAGTCTCATCCATTATCCATCGT
GGTGGCACCATCATTGGCTCCGCCCGTTGCCAGGACTTCCGTGAGCGTCA
GGGTCGCTTGAAAGCCGCTAACAACCTGATTCAGCGAGGAATCACCAATC
TGGTGGTCATTGGAGGCGATGGCTCCCTCACGGGCGCCAATCTGTTCCGT
CAGGAGTGGTCCAGCCTGTTGGACGAGCTGGTCAAGAACAAGACCATTAC
CACCGAGCAGCAGGAGAAGTTCAATGTCCTGCACATCGTTGGATTGGTTG
GCTCCATCGACAACGATTTCTGTGGCACTGACATGACCATCGGCACGGAC
ACGGCACTACATCGCATCATCGAGGCAATCGATGCCATCTCCAGTACAGC
CTACTCCCATCAGCGCACCTTCATCATGGAGGTCATGGGTCGTCATTGCG
GCTATTTAGCTCTTGTGGGTGGACTGGCGTGCGAGGCGGATTTCATATTC
ATTCCCGAAATGCCGCCCAAGGTCGATTGGCCAGACAGGCTCTGCTCTCA
GCTGGCCCAGGAGCGATCTGCTGGCCAGCGTCTGAACATCGTGATTGTGG
CCGAGGGAGCCATGGATCGCGAGGGTCATCCCATCACAGCCGAGGATGTA
AAGAAAGTGATCGACGAGCGTCTGAAGCACGATGCCCGCATCACTGTCTT
GTTCACGTGCAGCGCGTGGCAATCCCAGTGCCTTCGATCGTATTGGCTTG
CGCATGGGAGCTGAGGCCATTTGGCCCTGATGAGCACCAAGGACTCGGTG
CCAGTGGTCATCTCTTCTGGACGCAATCAAAGCGGTTCGCGTGTCGCTGT
ATGAATGGCTATAGTCCACCCA
UFO12201.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pfk-RB | 3508 | CG4001-RB | 563..1609 | 11..1049 | 4875 | 98.3 | Plus |
| Pfk-RA | 3217 | CG4001-RA | 634..1638 | 53..1049 | 4665 | 98.2 | Plus |
| Pfk-RC | 3188 | CG4001-RC | 563..1609 | 11..1049 | 4230 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10112612..10112960 | 150..498 | 1745 | 100 | Plus |
| 2R | 25286936 | 2R | 10114914..10115102 | 758..944 | 815 | 97.9 | Plus |
| 2R | 25286936 | 2R | 10113015..10113170 | 496..651 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 10111432..10111577 | 11..156 | 715 | 99.3 | Plus |
| 2R | 25286936 | 2R | 10113537..10113652 | 646..761 | 565 | 99.1 | Plus |
| 2R | 25286936 | 2R | 10115321..10115422 | 951..1049 | 215 | 87.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:05:05 has no hits.
UFO12201.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:01:56 Download gff for
UFO12201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RB | 536..1585 | 11..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:07 Download gff for
UFO12201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RB | 563..1612 | 11..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:16 Download gff for
UFO12201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RB | 563..1612 | 11..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:16 Download gff for
UFO12201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10113016..10113170 | 497..651 | 100 | -> | Plus |
| 2R | 10113543..10113651 | 652..760 | 100 | -> | Plus |
| 2R | 10114917..10115105 | 761..945 | 96 | -> | Plus |
| 2R | 10111432..10111575 | 11..154 | 99 | -> | Plus |
| 2R | 10112617..10112958 | 155..496 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:07 Download gff for
UFO12201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5998937..5999080 | 11..154 | 99 | -> | Plus |
| arm_2R | 6000122..6000463 | 155..496 | 100 | -> | Plus |
| arm_2R | 6000521..6000675 | 497..651 | 100 | -> | Plus |
| arm_2R | 6001048..6001156 | 652..760 | 100 | -> | Plus |
| arm_2R | 6002422..6002610 | 761..945 | 96 | -> | Plus |
