UFO12202.5prime Sequence
1111 bp (998 high quality bases) assembled on 2012-09-06
> UFO12202.5prime
AGTCGACATGATGCACAAATTGAAATATCGCGATAAATTAAAATGGCTTT
TAGCCCTTCTTGTGCTGATCGGCACTTGTTTTATTCAGACAAGGGGACAA
ACAAGAGATCCCAGATTTTATTCTCGGCCAGGCGTTGACTACCATTGGCC
AAATCCAGGCGATCCGGATTACAGAACCTACACGTTCAACGATCGCCGAT
ATGGTCATTATCAGCCAAATGGCTATGGAGCCAACTATCCAGGCAGAAAT
CCACCGGGACAATATCCACAGGGAATGCCGAATGAAGATCGCTTTCGATT
TGACCCGAACGATCCGAATGCGAGAACCCAGTTTCCGGGAGTGCTGGCCG
GATGGCGAGAGGATTTGCAGGGCAAGCAGCGGCGGGATTCGTTGACCCTG
GAGCGGGATGTTTTCGTGACCACCAACTATGGCCAGGTGCAGGGCTTTAA
GGTGTACATGTACGATAATCCAGATCCGAAGTCCTTCTATCGTCCCTACC
ACTCGACCGTGGATCGTGTGATGGGCGAGTGCTCGGTCTTCCTGGGCATT
CCCTACGCCCTGCCGCCCACCTTCGAGGGCAGGTTCAAGCCACCACGCGT
CCATCGAGGCTGGCAGCTGCTGCAGGCCGTCGACTTTGGACCCGCCTGTC
CACAGCCTGTGCGATATACGGGTGCCACGAAAGGAATCATGGACATGGAC
GAGGATTGCCTCTACTTGAACGTGTATTCGCCGAAGACTGGTGCTGGTGT
GGCTCAAAAATACCCGGTTATGGTGTACATCCATGGCGGCGAGTTCATTC
GTGGAGCCTCCAACCTATTCCAGGGTCATATTCTGGCCTCGTTCTACGAC
GTGGTCGTGGTGACCCTGAATTACCGCCTTGGTGCCCTGGATTCCTATCG
ACGGGTGATGAGAACTCGCCCGGAAACTACGGAATCCTCGATCAAGCGAT
GTCGCTACGTTGGGTCTATGACATATTTGAGTTCCTCACGTCCGATCGAA
TTCCATCACTCTATTTGTTCGGGTAGCATGAGCGCCTCCGCTGAACTTCT
TGATGGTGCACCCAACTCGGACATTGTGCGTCGGTTATCGCCAGTCGATC
GCTCTACGGAA
UFO12202.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gli-RF | 4468 | CG3903-RF | 569..1666 | 7..1096 | 4990 | 97.7 | Plus |
| Gli-RE | 4007 | CG3903-RE | 108..1205 | 7..1096 | 4990 | 97.7 | Plus |
| Gli-RD | 3975 | CG3903-RD | 76..1173 | 7..1096 | 4990 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15759417..15759846 | 736..307 | 2150 | 100 | Minus |
| 2L | 23513712 | 2L | 15759047..15759362 | 1047..735 | 1220 | 94.6 | Minus |
| 2L | 23513712 | 2L | 15760402..15760569 | 174..7 | 840 | 100 | Minus |
| 2L | 23513712 | 2L | 15760210..15760348 | 307..169 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:05:08 has no hits.
UFO12202.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:01:57 Download gff for
UFO12202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gli-RD | 66..1177 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:08 Download gff for
UFO12202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gli-RD | 69..1180 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:17 Download gff for
UFO12202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gli-RD | 69..1180 | 1..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:17 Download gff for
UFO12202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15758986..15759360 | 737..1101 | 92 | <- | Minus |
| 2L | 15759417..15759845 | 308..736 | 100 | <- | Minus |
| 2L | 15760210..15760342 | 175..307 | 100 | <- | Minus |
| 2L | 15760402..15760574 | 1..174 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:08 Download gff for
UFO12202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15758986..15759360 | 737..1101 | 92 | <- | Minus |
| arm_2L | 15759417..15759845 | 308..736 | 100 | <- | Minus |
| arm_2L | 15760210..15760342 | 175..307 | 100 | <- | Minus |
| arm_2L | 15760402..15760574 | 1..174 | 98 | | Minus |
