UFO12205.5prime Sequence
1042 bp (934 high quality bases) assembled on 2012-09-06
> UFO12205.5prime
AGTCGACATGGCCTCCACCAGCAATCTGCTGGACGTGGTGCGCCACTACC
AGCGCAGCATTGAGAAGCACGGCGAGGACGAACAACGGCTGCTGCACTGC
ATCACCAAGCTGTTCAACCTGCCGATCAAATTCGAGCACCTGCAGGAAAC
GGGAATTGGCAAGACGGTGAATGCCCTGCGCAAGATCAGCGGGGAAGTTG
GCGTGGCGGCCAAGACGCTGGTAACCAAGTGGAAGGCAATGGTGGCGAAG
GAGGACCCTTCGATCGCATCTACGCCTACAGCCATACATAACGAAGAGGA
CTCGGGCAAGACCAAGTCCAGCGACGAGGATCCCGACCAGGAGAACAAGG
GCGGCAACTCATCCAGCGGCGAGGACTTGAACACCAGCAAGCACAAGTCA
AAGCATGCCAAGAGCACCAAGCATGAGCGTAGCAGCAGCAGCCGATCTCA
CTCCAAGAGTAGGTCTGACTCGGATAAGAAGCACAAGAGCTCTCGCCACG
ATAAATCCAAGGATAGAGATAAAGATCGGGAGGGTCAGAAGGAAGCTAAG
GAGCACAAAGAAAAGAAGTCAAATGGCGAGCACAAGTCAAAGGATTCCAG
CAAATCCAGCAGCAGTCACAAGAGCAGCAAATCCGAGAGCCACAAGAGCG
AACACACCAAAAGCAAGCACGAAAAAGGACAAAACTTCTCACAGTGAATT
AAAGGGAAGTCAAAAGACAAGTCGAGCAAACACAAATCATCGTCCTCCCA
AGTCATCAAAGCGCTCCCATAGTCCCCCACGCCACGAGGGAGGAGTCCCA
AAAAGCAAAGATACCAAAAGTTAAATCGAAATCTTGAGGAAGATTCCGCT
GATGGGTTTGACTCCAGCATGGGCGCAATTTTTGACGATGTTCTTGGTCT
GCTGAACTTACCCATAAGTAGCAGGAGAGGCAGCATCTACCAGCTAGGAG
CAAGTTTGTCGCCTAGGCAACGGCGGCCCCTTCCTCGGTCAGCTCTATCA
GCACCTACGGATTGGCTGGGGTCTATCCTAAGGAGGCATCTT
UFO12205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EloA-RA | 2869 | CG6755-RA | 315..1307 | 8..1009 | 4560 | 97.7 | Plus |
| EloA-RB | 2697 | CG6755-RB | 224..1135 | 89..1009 | 4155 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23252248..23252835 | 88..675 | 2940 | 100 | Plus |
| 3R | 32079331 | 3R | 23252890..23253215 | 676..1009 | 1045 | 93.1 | Plus |
| 3R | 32079331 | 3R | 23251877..23251957 | 8..88 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:05:11 has no hits.
UFO12205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:01:58 Download gff for
UFO12205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloA-RA | 324..1340 | 1..1027 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:10 Download gff for
UFO12205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloA-RA | 305..1321 | 1..1027 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:18 Download gff for
UFO12205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloA-RA | 305..1321 | 1..1027 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:18 Download gff for
UFO12205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23251867..23251957 | 1..88 | 95 | -> | Plus |
| 3R | 23252249..23252836 | 89..677 | 99 | -> | Plus |
| 3R | 23252892..23253229 | 678..1027 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:10 Download gff for
UFO12205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19077589..19077679 | 1..88 | 95 | -> | Plus |
| arm_3R | 19077971..19078558 | 89..677 | 99 | -> | Plus |
| arm_3R | 19078614..19078951 | 678..1027 | 92 | | Plus |
