UFO12207.5prime Sequence
1103 bp (995 high quality bases) assembled on 2012-09-06
> UFO12207.5prime
AGTCGACATGCATCTGAGGATCCGTCTCACGTGTCGCAAATATGAAATTT
GGGCTCTGTCCATCTTCTCCCTGGTCACTGGTCTTTATGTCCTGCACTTC
TCCATAGCTCTGATCCTGGTCAACAAAGAGGTGCCCCAAACGCGCGGAAT
GCTGTACCCCAGGGAATCGGAGACGCGGGAGGTGCGATCTCTGGACGGGA
TCTGGAACTTTGTGCGCTCCGACCAGGCGAATCCCACGCAGGGCGTCCGG
GATGAGTGGTATGCCAAGGAGTTGAGCAAGAGCAGGCCCACAATACCCAT
GCCGGTGCCGGCATCCTATAATGACATAACCACGGACAATTTGAGGGATC
ACGTGGGCACAGTGTGGTACGACCGCAAGTTCTTTGTGCCCCGATCGTGG
TCAAAGGATCAGAGGATATGGCTGCGATTCGGCAGTGTTCACTATGAGGC
ATATGTGTGGATCAACGGCCAGAAGGTGGTGAAGCATGAAATGGGTCACC
TACCCTTCGAGGCGGAGGTCACCGATCTTCTGAGCTATGGAGCCGAGAAT
CGGATCACCGTTATGTGCGACAATGCTCTGATTCAGACAACTGTGCCGCA
GGGCAGGATTACGGAAGTGCCCAACGATGGTGGCATGACCATTGTGCAGA
GCTACACCTTTGACTTCTTTAACTATGCGGGAATCCACAGGAGCGTGCAT
CTTTACACCACGCCCCGTACTTTTATCGAGGAGGTTGAGGTCACCACAAA
CCTTTCAAAGGATGCCACCGTTGGCGAAGTGTTCTATAGCGTAAGCGTGA
ATGGCAGCGCTGCCAACGAGGCAGATAATGTCTTGCAAATCCAGGCCAAT
TTGTACGATAAGATGGCATATTGGTGGCGAATGCCACGTCGGACCAAAAA
CTTGGCGGCAGCTGCAAGTGAACCCGGTGAAGCCCTGTGGCCCTACCTAA
TGCATTCCGAACCGGGTTATCTGTTACAGCTGAGAATCAATTGCTGCGAC
ACGATGACTCTGATGTCTTACCGACTGAAAGTGGGAATACGCACACTAGT
TGGAACACGCCAGCGTTCCTGATCACGGCAAGCCGGTTACTCTCTGTTGG
ACG
UFO12207.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15117-RB | 2338 | CG15117-RB | 108..1201 | 6..1088 | 5025 | 98.2 | Plus |
| CG15117-RA | 2487 | CG15117-RA | 303..1350 | 52..1088 | 4795 | 98.1 | Plus |
| CG15117-RE | 2380 | CG15117-RE | 197..1243 | 53..1088 | 4790 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19124537..19124941 | 457..53 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 19124105..19124418 | 770..457 | 1570 | 100 | Minus |
| 2R | 25286936 | 2R | 19123822..19124037 | 982..770 | 900 | 97.7 | Minus |
| 2R | 25286936 | 2R | 19127470..19127517 | 53..6 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:05:13 has no hits.
UFO12207.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:01:59 Download gff for
UFO12207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RB | 100..1210 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:12 Download gff for
UFO12207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RB | 102..1212 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:20 Download gff for
UFO12207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RB | 102..1212 | 1..1100 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:20 Download gff for
UFO12207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19127470..19127521 | 1..53 | 94 | | Minus |
| 2R | 19123697..19124036 | 771..1100 | 93 | <- | Minus |
| 2R | 19124105..19124417 | 458..770 | 100 | <- | Minus |
| 2R | 19124537..19124940 | 54..457 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:12 Download gff for
UFO12207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15011610..15011922 | 458..770 | 100 | <- | Minus |
| arm_2R | 15011202..15011541 | 771..1100 | 93 | <- | Minus |
| arm_2R | 15012042..15012445 | 54..457 | 100 | <- | Minus |
| arm_2R | 15014975..15015026 | 1..53 | 94 | | Minus |
