UFO12212.5prime Sequence
1083 bp (965 high quality bases) assembled on 2012-09-06
> UFO12212.5prime
TCGACATGGCCAGGTCGCGTTCATCCGCTAAAGCCGTGCAGTTCAAGCAC
GAATCGGAGGAAGAGGAAGAAGACGAGGAGGAGCAGCTGCCTTCCAGGAG
AATGCACTCTTACGGAGACGCCGCGGCCATCGGAAGCGGGGTGCCGGCCT
TTTTGGCCAAATTGTGGCGCCTGGTGGACGATGCCGATACCAATCGCTTG
ATTTGCTGGACCAAGGATGGCCAAAGTTTCGTTATACAAAATCAAGCGCA
ATTCGCCAAGGAACTATTGCCACTAAACTACAAGCACAACAACATGGCCA
GCTTCATAAGGCAATTGAATATGTATGGATTCCACAAGATCACCTCTATT
GACAATGGCGGACTACGTTTTGATCGCGACGAGATTGAATTTTCGCACCC
ATTTTTTAAGCGCAACTCGCCTTTTCTACTTGACCAAATCAAAAGGAAAA
TATCGAACAACAAAAATGGTGACGACAAAGGTGTCCTGAAGCCGGAGGCC
ATGTCGAAGATTCTCACCGATGTGAAAGTCATGCGGGGTCGTCAGGACAA
TCTGGATTCGCGCTTCTCCGCCATGAAACAGGAGAACGAAGTGCTGTGGC
GCGAGATAGCCAGCCTGCGCCAAAAGCACGCTAAGCAGCAACAAATAGTC
AACAAACTGATCCAGTTCCTCATTACCATTGTGCAACCGTCGCGCAACAT
GTCTGGCGTGAAACGCCACGTGCAGCTGATGATCAACAATACGCCGGAAA
TTGATCGTGCACGGACCACCAGTGAGACCGAGAGCGAGAGTGGCGGCGGA
CCGGTTATCCACGAGCTTAGGGAGGAGCTTCTTGATGAGGTGATGAATCC
ATCACCGGCTGGCTACACCGCAGCCTTACATTATGACCAGGAGAGCGTCT
CTCCGCCTGCCGTTGAGCGTCCGCGATCTAACATGAGCATTAGCTCGCAC
ACGTCGAATATCGAATCAGAGTTGGGAGGACTTGCTGCTCAGGAATGGGA
ACCGCTGGGCGTTATTTCTAGATGCGGAACTCCTTCCCCCATGGACCCAA
AGTGGTGAATCTAATCGCCGGGCCCCACATGAT
UFO12212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsf-RA | 2771 | CG5748-RA | 244..1323 | 6..1083 | 4900 | 97.4 | Plus |
| Hsf-RD | 2897 | CG5748-RD | 244..1323 | 6..1083 | 4900 | 97.4 | Plus |
| Hsf-RC | 2838 | CG5748-RC | 257..1336 | 6..1083 | 4900 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18132274..18132941 | 990..325 | 3165 | 99 | Minus |
| 2R | 25286936 | 2R | 18133870..18134080 | 216..6 | 1040 | 99.5 | Minus |
| 2R | 25286936 | 2R | 18133004..18133114 | 324..214 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:05:02 has no hits.
UFO12212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:01:55 Download gff for
UFO12212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RD | 241..1249 | 6..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:05 Download gff for
UFO12212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RC | 257..1265 | 6..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:15 Download gff for
UFO12212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RC | 257..1265 | 6..1011 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:15 Download gff for
UFO12212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18132274..18132941 | 325..990 | 98 | <- | Minus |
| 2R | 18133004..18133112 | 216..324 | 100 | <- | Minus |
| 2R | 18133871..18134080 | 6..215 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:05 Download gff for
UFO12212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14019779..14020446 | 325..990 | 98 | <- | Minus |
| arm_2R | 14020509..14020617 | 216..324 | 100 | <- | Minus |
| arm_2R | 14021376..14021585 | 6..215 | 99 | | Minus |
