UFO12213.5prime Sequence
1005 bp (719 high quality bases) assembled on 2012-09-06
> UFO12213.5prime
AGTCGACATGGCTGCCTACACACAATTCGGATACGGAGGCTTTCCGTCGG
CCTCGCAGCTCCTGCCACCGAGTGTCCAGACGACGGAGGACGCTTCCGCG
AACGTGAATGTGAATGTGAACGAGGCGCTGGTGATGACAAACGCCCCGGC
GATGAGCCCCACGGGAGGTCAGGATTGTCAGGGTAGCCAGCCGTCGGGCG
GCGCTGGCGGAGATGCCTCCTCGGGGGCGCTGAGTCCCAATGCGCTTTCG
CAGAACTCGAATGCGGCGACGGTGGTTGGAGCAGGTGGTGGATCCTCGGC
GGGCGGAGGAGGTCCAGCGGATCTGGCCACCGGTGGCTCCCTGGACGGCA
ACGGCGTGGGCACGACGCCCACTGCTGGTGGTGCTGGTGGTGGTGGATCA
TGCTGTGAGAACGGGCGGCCCATAATGACCGACCCGGTGTCGGGTCAGAC
GGTCTGCTCCTGCCAGTACGATTCCGCCCGCCTCGCCCTCTCCAGCTACT
CCCGTCTACCGGCTGCCAGCGTTGGCGTCTATGGAACGCCGTACCCCTCA
ACGGACCAGAATCCCTACCAGAGCATCGGAGTGGACAGCTCCGCCTTCTA
TTCGCCGCTGAGCAATCCGTACGGACTTAAGGATACGGGCGCGGGTCCGG
AAATGGGAGCTTGGACCTCTGGCTGGACTTCAGCCCACTACGGGCTACTA
CTCCTACGATCCCATGTCTGCCTACGGCTATGGAGCCAGTTACTACCTGG
CTGCTCGTCGCATAAATGCACGCGTGAATCCCACTGCCACATTGAAGGTC
TGGCTAATGAGCCACAAGATGAATCCGGTATCCCACAAGGGTGAAAGATC
ATGCTTGGCCATCTTCATCTAGATGACCCTTCACCCCGTGTCACTTGGGT
TCGCCATGCCGCGGTCTGCGACTGGAGAAGGAACACATGAATGTGTGGTG
TGCCCCAAGAATCCGCATAATGACTAATGAGTACGCCTCTGGTGTCGGAC
TATGA
UFO12213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ara-RB | 2918 | CG10571-RB | 428..1423 | 4..1005 | 4065 | 95.1 | Plus |
| ara-RA | 2942 | CG10571-RA | 428..1447 | 4..1005 | 3815 | 92.9 | Plus |
| caup-RA | 4317 | CG10605-RA | 1448..1952 | 395..886 | 350 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12585738..12586293 | 55..610 | 2750 | 99.6 | Plus |
| 3L | 28110227 | 3L | 12589518..12589634 | 610..727 | 525 | 98.3 | Plus |
| 3L | 28110227 | 3L | 12594188..12594341 | 727..880 | 275 | 87.3 | Plus |
| 3L | 28110227 | 3L | 12581099..12581153 | 4..58 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:05:20 has no hits.
UFO12213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:01 Download gff for
UFO12213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ara-RB | 424..1336 | 1..916 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:16 Download gff for
UFO12213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ara-RB | 426..1338 | 1..916 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:22 Download gff for
UFO12213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ara-RB | 426..1338 | 1..916 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:22 Download gff for
UFO12213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12581097..12581153 | 1..58 | 96 | -> | Plus |
| 3L | 12585742..12586293 | 59..610 | 99 | -> | Plus |
| 3L | 12589519..12589634 | 611..727 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:16 Download gff for
UFO12213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12574197..12574253 | 1..58 | 96 | -> | Plus |
| arm_3L | 12578842..12579393 | 59..610 | 99 | -> | Plus |
| arm_3L | 12582619..12582734 | 611..727 | 98 | -> | Plus |
