UFO12214.5prime Sequence
1083 bp (944 high quality bases) assembled on 2012-09-06
> UFO12214.5prime
AGTCGACATGATGCCCGAAACTGAACGCGACGCACATTTGGAGGCAGCTG
AAATGGCCAGTGGCGCCCTGGCGCATAATTACGGTATTGTTAAGGATCAG
CAACAACAGCAGCAGCAGCAGCAACAACTGCATCACCTGCAGCAGCAACA
TCATCATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCCAACTCCG
ATCTGTACAAGATGGCCTGCAATGGCTACAACTATAGCAGTCCGCTGACC
ATACCGCCCACCTCGATGACCACGCACATGGTCAGTCCCATCGGGAACAG
CAAGGAGAAGCTGGTGAATATGTTGCGCGTGCGTGACAACAACAACATGG
CCAGCACGATCTCCGACAGTCCACCCACAACGTTTCTGCAAAAGCAACTG
GAGGCGGTTGTGGCGCCCCGGCCAAGTTCAGTGCATCCCCAGCATCAGCA
GCCGCAGCAGCAGACTGTCCAGCTGCAGCAACAACGGCGTTCGGTCAGCA
CACCTGCGATTACAACCACACCTGGTCCGCCCACCAATTGGCATGCCCAT
GTCTATGATCGACTGCCGCCACACCCGACGCCCCACTCCATCGCCGATAT
CCTGGGCATGTCCTTTGTCAAAAAGGAACGGCCAGAGGTCGCCTTTGATG
CCCAAGGACCGGCCAAATCGCCGAATAGCATACTGAAACCGTATCAGGAA
CAGCAGCCCATTCGAAGCTCCTCCATTTCGATGAGCGATGCCAGCGAGGA
GGAGAGTGCCGCTGTTGCTGGGGCAACATCTGCCGCAACAGCAGCAGCAG
CAGTGGCAGCAACCATCACAGCAGCAACTGTTGCAACTCCGCTCGATCAG
CCGCTAATCTGTGTGTGGTCAAAAGTCTCGCGACAGCAACACTCACCCAT
GCCGGCCACCAAACAGTGCCAATCCTCGGATAGTCTGCTACGAAGTACGA
AAGTCTGGTAAGCCAGCGCCAAGAAAAGAAGCTATCGTCAACTGCTGCCT
CTACACCGGGATATCAGTCAACGGGCAGCATGAACAGTTGATGCAGACAG
TGATGCCAACAATACCGTTCCGCCGCCAGCAAT
UFO12214.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NK7.1-RD | 2731 | CG8524-RD | 482..1550 | 8..1064 | 4775 | 97.5 | Plus |
| NK7.1-RC | 3540 | CG8524-RC | 564..1632 | 8..1064 | 4775 | 97.5 | Plus |
| NK7.1-RB | 2996 | CG8524-RB | 747..1815 | 8..1064 | 4775 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14344229..14345170 | 945..8 | 4450 | 99.2 | Minus |
Blast to na_te.dros performed 2014-11-28 18:05:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2652 | 121..488 | 284 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..6923 | 336..488 | 200 | 63.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1164 | 433..526 | 137 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1503..1575 | 414..488 | 136 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6848 | 434..488 | 131 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2424 | 372..485 | 125 | 60.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1155 | 433..489 | 123 | 68.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..170 | 439..488 | 115 | 70 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9200 | 439..488 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2415 | 433..488 | 110 | 71.4 | Plus |
UFO12214.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:02 Download gff for
UFO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NK7.1-RB | 555..1612 | 1..1049 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:18 Download gff for
UFO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NK7.1-RA | 413..1470 | 1..1049 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:24 Download gff for
UFO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NK7.1-RB | 740..1797 | 1..1049 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:24 Download gff for
UFO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14344225..14345174 | 1..949 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:18 Download gff for
UFO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10169947..10170896 | 1..949 | 98 | | Minus |
