UFO12215.5prime Sequence
1092 bp (992 high quality bases) assembled on 2012-09-06
> UFO12215.5prime
AGTCGACATGGATCGGGATTCGAGCATGCAGGCGAAAAACCTAGATGCTC
AATGCAACCCAGACCTCAAAATGGCGTCTGCAAATTCAGAAACTTTAGCG
TCGGCAACGCACGAGCTGAAAATTATGGACGTAGAGGGTGGTGCTCTGGT
GGATCCGGATCACATCGAGGAAGTGGAGACCTCCATGGTCATCGTGGTGG
ATGATGACGATGGGGATGTGGCCATGGTGGTGGAGGAGGACAAGCACCCG
ATGCGGGATGACCCGTGTATTGAGGACATCATGGATGACGAACATGCTCC
ATTGGTGGCCGAGCTACAGTCCGCTCTAAATAACCCAGACGACAAACAGG
CCAGCGAGGATCCCCTCCTGGAAGACCAGGAACGTGAACCCGATGCCATG
TCCACTAAAACTGAACCCTCCAGCGATGCGGAGAGCTCCCATTCGTACCA
CGATCCCATGGGCCTGCTGGAGAGGATTGAAATCCATGATCCGGGAGACA
GCCAGGATGACGACGACGAGGATGACGAAAGCAGCAATGGCGGTGGCGTT
GACGGAGGCATGCGCCGCAAGATGCCCCGCGCACAGCGCTGGCTCCTCTG
GATGAAGCGTTGGCCCTGGATCCTACACGAGGACTCCGATGGCACCTTAG
CGTTCTGCCTTTACTGCAACATATCCATTAACGTGAACAACCGCTCTAGA
CACATCCAACAGCACAACGTGTCGCTCTCCCACCAGGAACGCGAGTGCAA
CTATCTGGCATTCAAGAAAAGTGAGGAGGAAACTCGAGGAGCAATCAGCG
ACAACGAAATCAAGCACGAATTCGGCACCAAGAGCTATGTGGCCGCCATG
AAGCAAAAACGAATCTCCGAGACCGAGGCATTTAACAACTTCAACTGGCT
GCGTTGGCTCGGTTGGCATCTTGGCTTGAACGTTCCATGCCCACAGGGAC
CATCGGGACATGTCGCATCTGCAGGGGTGGCGATGAACCGTGGAGGTTTG
TCTTATTTGCGCAGGCGCCACGAAACCACAAAGGTCCATGGAGGCACTGG
CGCACTAGATTCGATAGCGGGGAGTTCGGGAGGAAGTAGGGA
UFO12215.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)3-7-RA | 5051 | CG8599-RA | 153..1207 | 8..1062 | 4970 | 98.6 | Plus |
| Su(var)3-7-RB | 4217 | CG8599-RB | 153..1201 | 8..1062 | 4870 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13264516..13265300 | 8..792 | 3925 | 100 | Plus |
| 3R | 32079331 | 3R | 13265735..13265990 | 793..1049 | 865 | 94.2 | Plus |
Blast to na_te.dros performed 2014-11-28 18:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 2122..2159 | 1031..1069 | 129 | 84.6 | Plus |
UFO12215.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:03 Download gff for
UFO12215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-7-RA | 154..1226 | 1..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:19 Download gff for
UFO12215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-7-RA | 145..1217 | 1..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:27 Download gff for
UFO12215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-7-RA | 145..1217 | 1..1070 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:27 Download gff for
UFO12215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13264508..13265300 | 1..792 | 99 | -> | Plus |
| 3R | 13265735..13266014 | 793..1070 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:19 Download gff for
UFO12215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9090230..9091022 | 1..792 | 99 | -> | Plus |
| arm_3R | 9091457..9091736 | 793..1070 | 94 | | Plus |
