UFO12217.5prime Sequence
1105 bp (1004 high quality bases) assembled on 2012-09-06
> UFO12217.5prime
AGTCGACATGCGACTCTTTGCCAGCAGTGGCCAGGCTGCAACATCGCCAG
CACTGGCCCACAGTTCCAGCGATGAGGCTGGCGAGGTCATTGAGAATTCC
CATACCAAGAGAGCAGGATGCTCCGTGCTGCAGAGCAGTGGTGGAAAGTC
AAGGTCGCTGGAGCGTTACTCGGGAGCACCCAAGATACACCAGCAGACGT
TGGAGATGCTGCCGCCCTATGCCACGCCCACGTGCAGCACCCGTCGCCGA
CTCCTCGCCCCCTTTCGATCGCTGAAGCGTCGCAGTCGGAGCAGCAGCAG
CAGCAATGAGTCGCACCACTTTGGCAACCATCTCAACAACCTGGTGGTGG
TCAATGTAGGGGCGGCCGCTGCAAATGGAGGTGTGGCCAAGGCCAAGGCG
AAGGCCAGCTCCCAAAGCGGTGACAGTGGAACCGGTGGCACCGAATTGGA
GCATGAAATGGAACAGGATGACGACGAGGAGGATGAGGAGGAGGGCGAGG
AGATGGACGAACTGAGCCTGAGTTACTCGCAGTTGAGCAGCAGTGGCTGC
GAGGAAGCCGAAGCTCCACCAGAAGATGTTCCTGATGATCGACAAGCAGC
TGTGGAGGCAACAGTCTCTGCCTGCGTGCAACACGTTGCCAATGAGCGGC
GACGCAACATCCTGTCGCTGTACTCGTCCTCGTCGGAGGAGCAGCTCCAC
TGCCGCCTGGGCGACATTACGCTGGTGGACGATACCTACTCCAACTACGA
TCCGCAAAACGATGCCGAGCGCATGTTCCTCCAGGTTGTCGGAATCTTAC
GCGATGAGAATGAGAAAATGCGTCAGTTCCAGAAGATCCTGGAGGATCTT
AGCTCCCGCGTTGCCCTTGCCGAGCAGACAAAACCTCCTGGCTGCCACCC
TCATCCGTGGGCGAGGCCAATGAGCAGATGCAACAGTTGCAGCGCCTGAG
GGACAAGATGACGACGCCAGTGCATTGCTGATGATTGCACGAGCAGCAGT
CTTCTCACGCATCAGTCTGTTACCCACACCCTGCCTTCTCAGCTGAGACT
TAACACGCGCATGAACTCTGCCAATCGCGAATGACGCGCCGAGTCCTTGT
CAGCT
UFO12217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dys-RJ | 4723 | CG34157-RJ | 530..1619 | 8..1080 | 4975 | 98.1 | Plus |
| Dys-RE | 4821 | CG34157-RE | 931..2020 | 8..1080 | 4975 | 98.1 | Plus |
| Dys-RH | 11964 | CG34157-RH | 8577..8860 | 814..1080 | 945 | 92.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19585708..19586514 | 8..814 | 4035 | 100 | Plus |
| 3R | 32079331 | 3R | 19590122..19590314 | 813..1001 | 765 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:05:30 has no hits.
UFO12217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:04 Download gff for
UFO12217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dys-RE | 628..1731 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:22 Download gff for
UFO12217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dys-RE | 923..2026 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:29 Download gff for
UFO12217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dys-RE | 923..2026 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:29 Download gff for
UFO12217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19585700..19586514 | 1..814 | 99 | -> | Plus |
| 3R | 19590124..19590376 | 815..1053 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:22 Download gff for
UFO12217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15411422..15412236 | 1..814 | 99 | -> | Plus |
| arm_3R | 15415846..15416098 | 815..1053 | 93 | | Plus |
