UFO12218.5prime Sequence
1091 bp (1001 high quality bases) assembled on 2012-09-06
> UFO12218.5prime
AGTCGACATGGAAGCACTACGTCGATTTTTAAGAACGGAGACTCGTTGTC
GCCTCAACGGGATACATACCCTAATATTGTGTGTCCTATTTTTGGGTTTT
TCGGTGGCTGGTGAGATGCCGGATTTGTTCACTCCCGAACCGGATCTCAC
GATAGACGAATGCCACGATGAGTTCACCATTGCCTGTGCCAACGCTTCAC
TGGTCTTCTCCGATTCCTACGATCTGTGCGAACTGAATGCCAATGAGACC
ATCATCAATCTAGAGGTCGATGTTGAACTGGAGCGACTCCAAATCGAGTT
GGGATCCAGTGCGGTGTGCGGCAATATGCAAATCTGCGATACATTGGTTG
ACGATCTGGAGTACTTTCAGTGCATCAATAAGAACGGAATCCATAACCTC
GACATTCTGACCGAAATAAATTACAATGCCACAAGTGCTTACACACGACT
TCACGAGGACTATGATGCAGTGCATCGGGCGCTTCTGCTTTGCGGCCTCG
ATGCCCAAAAAAAGTACATGGAGGACATAAGACAGGCCCACAGAGAACTC
ACTAAATGTCGATCCGAAATCGACGAGCTTAACGAGGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGATCGCCAGCGGCATCAGCACCTGTCGCTGCGTATATA
TTTGCCCATGTGAAACGGGGCGAGAGTGTCATATGCACGTTAATCAAACT
GGTGAACTCACCAGGATGCTGAACGAAAAACATATCCCATAACCCTTAAG
AAATAGCAGCTCACGTACCGCCAATCTTGCAATATGTACTG
UFO12218.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14495-RB | 932 | CG14495-RB | 217..795 | 8..586 | 2895 | 100 | Plus |
| CG14495-RA | 838 | CG14495-RA | 20..598 | 8..586 | 2895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18049328..18049706 | 386..8 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 18049044..18049244 | 586..386 | 1005 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:05:34 has no hits.
UFO12218.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:04 Download gff for
UFO12218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14495-RA | 15..598 | 1..586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:23 Download gff for
UFO12218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14495-RA | 15..598 | 1..586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:31 Download gff for
UFO12218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14495-RA | 15..598 | 1..586 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:31 Download gff for
UFO12218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18049044..18049244 | 386..586 | 100 | <- | Minus |
| 2R | 18049329..18049711 | 1..385 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:23 Download gff for
UFO12218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13936549..13936749 | 386..586 | 100 | <- | Minus |
| arm_2R | 13936834..13937216 | 1..385 | 99 | | Minus |
