UFO12219.5prime Sequence
1128 bp (1001 high quality bases) assembled on 2012-09-06
> UFO12219.5prime
AGTCGACATGTCCAGAAGTTCGAGGTTATCAGTAACTGAAACTCAGCGCA
AAAGCACTCCAGTGGTAAAGAAGGCGGTTATTCGCAGTCGATCCTACGAT
GGGGATGCGTTCGTCAATCTCTTCGCCCATCGCGGCGCCCGAGACATCAT
GATCTTGGATAGCCATGGAGTGCCCCTCCGATCCACCTGCAGTCAGAGAC
GCACCTTCGTGTTCGTCTCTAACCTGAAGCCGCTGCTCTTCATGGCCCGC
AACGTGGTCAGGGATCTGGACCCCTCGAACGACATAACCTTCATGCGGAT
TCGCTCCAATATGGGCGAAATCCACATGACCCTGGGCACGGACTTCATTT
TGATCGTTGTGCAGAAGCTGAGGAGGCTCAGGAGCAGCTCAACATCAGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTG
TCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATT
GGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCA
GGTTTTCACGTAACACGGCACATCTTGCGAATATATGTGTAGAAACTGCC
GGAATCGTCGTGTATTCACTCCAGAGCGATGACACGTTTCAGTTGCTCAT
GGAAAACGGTGTAACAGGGTGAAACTATTCCCATATCACAGCTCCACGTT
CTTCATGCATACGAATTTCCGGATGGACCATCATCAGGCGGCCAGAGGTG
ATTAAGGCGAAACTTGGCTATTTCCTTA
UFO12219.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16837-RA | 576 | CG16837-RA | 86..475 | 8..397 | 1950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24475616..24475931 | 82..397 | 1580 | 100 | Plus |
| 2R | 25286936 | 2R | 24475471..24475544 | 8..81 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:05:37 has no hits.
UFO12219.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:05 Download gff for
UFO12219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16837-RA | 37..446 | 1..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:25 Download gff for
UFO12219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16837-RA | 77..486 | 1..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:32 Download gff for
UFO12219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16837-RA | 77..486 | 1..407 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:32 Download gff for
UFO12219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24475616..24475931 | 82..397 | 100 | == | Plus |
| 2R | 24475462..24475544 | 1..81 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:25 Download gff for
UFO12219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20362985..20363067 | 1..81 | 95 | -> | Plus |
| arm_2R | 20363139..20363454 | 82..397 | 100 | == | Plus |
