UFO12220.5prime Sequence
1117 bp (999 high quality bases) assembled on 2012-09-06
> UFO12220.5prime
AGTCGACATGAAGACGATTTCGCTGCTAACTTTTGTGGTGATGATGCTCG
GAGTGGCACTGAGCTTGGTTTGGGCCGGCCCCGATGATGGCTACCTTTAT
GACCAGCCATCGGGTGAGCAACTTCAGGAACTCCAGGTGATCTCTCCCCC
CAGGAAGCTCCGGCTAAAGCCACGTGTCTACCCAGGGCATCCCTCTCAGG
CTTGCGGAAACGTGGAGGCGACGGATCATGCCGCTGCCCTGACCACCTAC
CATGCCAACCGCCCCCAGCCGCGTCGCATTTACAATCACCAGGAAGTCGA
GGTGGACAGCTCGTTCTTTGAGCCCACGCCGGATCGGATCGAGGAACTCA
AGCGTATTCTCTTGGATCAGCAAGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCA
ATAAACCCTTTAGGGAAATAGGCCAGGTTTCACCGTAACACGCCACATCT
TGCGATATATGTGTAGAAACTGCCGGAATCGTCGTGGTATCACTCAGAGC
GATGAAACGTTTCAGTTGCTCATGAACGTGTACAAGGGTGACACTATCCC
ATATCACAGCTCACGTCTTTCATGCATACGAAATCCGATGACATCATCAG
CGGCAGGAGTATAGCCGGATAACCTGTGCCTAATTCTTACGCTGAAGGCG
TATATGCAGCTGACGGT
UFO12220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13862-RA | 490 | CG13862-RA | 59..425 | 7..373 | 1835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22332158..22332494 | 37..373 | 1685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:05:40 has no hits.
UFO12220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:06 Download gff for
UFO12220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13862-RA | 54..428 | 1..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:27 Download gff for
UFO12220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13862-RA | 54..428 | 1..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:33 Download gff for
UFO12220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13862-RA | 54..429 | 1..377 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:33 Download gff for
UFO12220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22332159..22332494 | 38..373 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:27 Download gff for
UFO12220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18157881..18158216 | 38..373 | 100 | == | Plus |
