UFO12221.5prime Sequence
1065 bp (987 high quality bases) assembled on 2012-09-06
> UFO12221.5prime
AGTCGACATGGATGAATGCGACAACCCCGTCGTCGTCTCACTAGGAAAAC
TCGAATCACAGCAGCTAAACGAGGGGGTCGCCGAGCCGAGTGCGGAAAAT
TCGGATCAGGAGCAGGCACTTTGTGACTACAAAGAGCCGAACATTGATGA
TAAGGAAGCGCTTATAGAGCAGGACCTTCACAAATCATCAGTCGAGGAGG
ACGCAGCTAACGACGCGGAAGTCGAGGCAGTCATCATGGGACAGGCGGAG
AGCAAGAAGCAGGGCAGCAAGTCGAGTCGCCGCCACCACAATGGCAACGG
AAATAGTAATGGCAATCCCACGGAGGCGATGGAACAGAATCAGACGGTGC
ACACCAAAGGCACCGCCATGTCCTTTGGTTTCCGCAAAAAGCTCAATGGG
ACGCCCAAGAAGTTCAAGAAACTCCTGGAAGGCGGCGACAAAAGCGCAAC
TCGCACAGACACAAAGGATGACAACGGAAATGCAGCTGTTCCCATTCACT
TCGAGAAAGTAGGCGCCGCCGCTGTACAGAAGGCTGGGACTTTGGCGACA
GGTGCGGCCGGCGGACGTTTCGGTTATCGGTGGGGCGGTGCCACGCCCCT
CTTCTGCAGGCTTCACTGCGCCCAGTGAAGATTCCGAATCGGAATCGATG
GCCAATGCCCAAAACAACATCAACAACAACAATAACAATAATAATGGACG
TGGAACGGAGAATGGTCCGGTGTTGGTGAGCAATTTGAAACGACGCTCCA
AGAGCGCACACGCCGGACGATCCGGCGATGGGGAGCCCAAAATAGCCCAG
CCCAAGACGCTGACGTTCAACCTGAATCAGACACCACCATCGAGTACCAG
CGGCGTCAGTTCTTCGGCGAGATCGCGGACGAACGTCGGGTTCCGGATCC
GGATCGGGACGGGATCGAGAGCTATGCACGAGATATACTACACACTGTCA
GCATGCATGCCATGTCATAGTCGCCCCACACCGCGACCCACTCCAGCAGC
TATGCAGTCAACTGCAAACGTGAGCTGCCAGCGGAGTACCGGTGCATCGT
TGACGCCACCAACAA
UFO12221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42268-RM | 5329 | CG42268-RM | 455..1464 | 8..1005 | 4710 | 98.5 | Plus |
| CG42268-RL | 5385 | CG42268-RL | 455..1464 | 8..1005 | 4710 | 98.5 | Plus |
| CG42268-RH | 5383 | CG42268-RH | 455..1464 | 8..1005 | 4710 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9750053..9750300 | 485..238 | 1240 | 100 | Minus |
| 3L | 28110227 | 3L | 9749518..9749769 | 735..483 | 1215 | 99.6 | Minus |
| 3L | 28110227 | 3L | 9750891..9751122 | 239..8 | 1160 | 100 | Minus |
| 3L | 28110227 | 3L | 9749243..9749438 | 928..736 | 830 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:05:42 has no hits.
UFO12221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:07 Download gff for
UFO12221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42268-RH | 448..1479 | 1..1016 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:29 Download gff for
UFO12221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42268-RH | 448..1479 | 1..1016 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:35 Download gff for
UFO12221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42268-RH | 448..1479 | 1..1016 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:35 Download gff for
UFO12221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9749195..9749438 | 736..968 | 95 | <- | Minus |
| 3L | 9749518..9749766 | 486..735 | 99 | <- | Minus |
| 3L | 9750053..9750299 | 239..485 | 100 | <- | Minus |
| 3L | 9750892..9751127 | 1..238 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:29 Download gff for
UFO12221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9743992..9744227 | 1..238 | 98 | | Minus |
| arm_3L | 9742295..9742538 | 736..968 | 95 | <- | Minus |
| arm_3L | 9742618..9742866 | 486..735 | 99 | <- | Minus |
| arm_3L | 9743153..9743399 | 239..485 | 100 | <- | Minus |
