UFO12224.5prime Sequence
1098 bp (1001 high quality bases) assembled on 2012-09-06
> UFO12224.5prime
AGTCGACATGTGCGCGTGCCTAATCGCTAAGATAATTCTATGTAGTTTTC
GTTTGTATACAATAAGTGCCTTTTATATGTTAACGACGATGTCAGCCAGC
AGCAATACAAACAGCCTGATCGAGAAGGAGATCGACGACGAGGACATGCT
TTCGCCGATCAAGTCCAACAACCTGGTGGTGCGGGTCAACCAGGACACGG
ACGACAACCTGCAGGCGCTATTCGACAGCGTCCTGAATCCGGGTGACGCC
AAGCGCCCGCTGCAGCTGCCCCTGCGCATGCGGAAGCTGCCCAACTCCTT
CTTCACGCCCCCGGCGCCCTCGCACTCGCGGGCCAACAGCGCCGACTCCA
CCTACGACGCGGGCTCCCAGTCGAGCATCAACATCGGGAACAAGGCGTCC
ATCGTCCAGCAGCCAGATGGCCAGTCGCCCATCGCCGCCATCCCCCAGCT
CCAGATTCAGCCGTCTCCCCAGCACAGCCGCCTGGCGATACATCACTCCC
GAGCCCGCAGCAGCCCCGCCTCGCTGCAGCAGAACTACAATGTGCGCGCC
CGGAGCGACGCAGCAGCAGCCAACAATCCGAATGCCAATCCGAGCAGCCA
ACAGCAGCCCGCTGGGCCCACTTTCCCAGAGAACAGTGCCCAAGAGTTCC
CCAGCGGCGCCCCGGCCAGCTCGGCCATTGATCTGGACGCCATGAACACC
TGCATGTCGCAGACATTCCCATGTCCATGCAGACAGTGCACAAGAAGCAG
CGCTCCTACGACGTCATCAGCCCCATTCAGTTGAACCGCCAACTAGGCGC
CTTGCCGCCGGGATGGGAGCAAGCCAAGACCAATGATGGCCAGATCTACT
ACTTGAATCATACTACAAAATCTACGCAGTGGGAGGATCCCAGAATCCAT
ATCGCCAGCAGCAGCAAATCTTGATGGCCGAGCGAATAAGCAGATGATGT
TTTGCAAACTACAAACAAACTACCACATCGACCATGCTACATTTGGGTCC
ACTGCAGATGTGGGAGGCAGCAGTTACCGAGTCGGAATCTTTACCTTTAT
AATCACATGATCGAACGACTCATGATGATCCAGAATGCATCTGCTACA
UFO12224.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RF | 1525 | CG4005-RF | 171..1270 | 8..1089 | 4965 | 97.9 | Plus |
| yki-RG | 1460 | CG4005-RG | 106..1205 | 8..1089 | 4965 | 97.9 | Plus |
| yki-RD | 1369 | CG4005-RD | 171..1110 | 8..944 | 4625 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24067465..24068315 | 857..8 | 4205 | 99.9 | Minus |
| 2R | 25286936 | 2R | 24067172..24067254 | 939..858 | 365 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:05:16 has no hits.
UFO12224.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:00 Download gff for
UFO12224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RF | 167..1275 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:14 Download gff for
UFO12224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RG | 102..1210 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:21 Download gff for
UFO12224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RG | 102..1210 | 1..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:21 Download gff for
UFO12224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24067163..24067254 | 858..946 | 96 | <- | Minus |
| 2R | 24067465..24068319 | 1..857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:14 Download gff for
UFO12224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19954686..19954777 | 858..946 | 96 | <- | Minus |
| arm_2R | 19954988..19955842 | 1..857 | 99 | | Minus |
