UFO12226.5prime Sequence
1117 bp (972 high quality bases) assembled on 2012-09-06
> UFO12226.5prime
AGTCGACATGGTTCGACCAACACTAGTTGCGCTGGCTAAGCGCGTACCGC
TCATACACTTCCGCAAGGGTGGTGCAGGAGTGCCGGGCGCCCAGACAGCA
AACCAGAAGTTGGCCGGTGGACCAGCAATTGAGGACTATGAGCTGCCGGC
ACGATTTGCCCGCAAGCCAATTGATCCCGAAGAGGCGGCTTACATTAATA
ATGGGGGTATTCCAAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC
CAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGA
AAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTG
GTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAA
CCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCG
AATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGC
GATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAAC
ACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCG
GATGAGCATTCATCAGCGGGCAAGATGTGAATAAAGGCCGATAAACTGTG
CTTATTTTTCTTACGTTCTTTAAAGCCGTATATCCAGCTGACCGTTCTGT
ATAGTACATTGAGCACCTGACTGAAATGCCTCAAATTGTCTTTACGATGC
CATTGGATATATCAACGGTGCTAATCAGTGATTTTTTCCCTAATTAGCTC
TAGCTCTGAAGATCCTA
UFO12226.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44242-RA | 426 | CG44242-RA | 88..297 | 8..217 | 1035 | 99.5 | Plus |
| CG44242-RB | 456 | CG44242-RB | 217..327 | 107..217 | 540 | 99.1 | Plus |
| CG44242-RB | 456 | CG44242-RB | 88..189 | 8..109 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16196690..16196799 | 108..217 | 535 | 99.1 | Plus |
| 2R | 25286936 | 2R | 16196471..16196572 | 8..109 | 510 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 786..853 | 123 | 68.1 | Plus |
UFO12226.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:09 Download gff for
UFO12226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8446-RD | 79..300 | 1..222 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:36 Download gff for
UFO12226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44242-RA | 81..302 | 1..222 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:40 Download gff for
UFO12226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44242-RA | 81..302 | 1..222 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:40 Download gff for
UFO12226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16196464..16196572 | 1..109 | 96 | -> | Plus |
| 2R | 16196692..16196799 | 110..217 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:36 Download gff for
UFO12226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12083969..12084077 | 1..109 | 96 | -> | Plus |
| arm_2R | 12084197..12084304 | 110..217 | 99 | == | Plus |
