Clone UFO12227 Report

Search the DGRC for UFO12227

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:122
Well:27
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptzuc-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12227.5prime Sequence

698 bp (698 high quality bases) assembled on 2012-09-06

> UFO12227.5prime
GTCGACATGTTGATTACCCAAATAATTATGAAACAAATTCGAGACTATCC
CATTGTGTCCACAATAAGCATTGCCGTCAGCACTGTCCTGGCCTCAGAGG
TGATTTGGAAGCTGGTGCAGTGCTCGCGCAGCAAGCGAGAGAAGGCAAGC
CGCGTGCACGAAGTGATCATCTTCAATGAACTGGGCGAGATCTGTGCGGC
GGTGCATATGCGCAACAGCAGCATGGGATCCCAGAAACCACAAGTGTCGC
CCTGCTGCAACACGCATTGTTCGCTGCGGAATGTGGCCAAGATCGTAGAG
CAGATCGATCGGGCTGTATACTCCATTGACCTGGCCATATACACCTTCAC
CTCGCTTTTTTTGGCGGATTCAATAAAGCGGGCCCTGCAGCGCGGCGTGA
TTATCCGGATCATCAGCGACGGGGAGATGGTCTACTCCAAAGGTTCTCAG
ATCAGTATGCTGGCACAATTGGGAGTTCCAATTCGCGTCCCCATTACCAC
GAACTTGATGCACAACAAATTCTGCATAATCGACGGCTTCGAGCGCGTCG
AGGAGATTCGTCTGCTGAGGAAGCTCAAGTTTATGCGTCCCGTGCTATAG
CATCGTGATCCGCGGCTCCCGTAAACTGGACGGCTCTTTGGACTGGGAGG
CACTTGGGAGAACTTGCATTATCACAGCTGACGACAAACTCACAGCCA

UFO12227.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
zuc-RA 1148 CG12314-RA 59..746 7..698 3315 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11989137..11989824 698..7 3215 99 Minus
Blast to na_te.dros performed on 2014-11-28 18:05:53 has no hits.

UFO12227.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:10 Download gff for UFO12227.5prime
Subject Subject Range Query Range Percent Splice Strand
zuc-RA 31..724 1..697 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:38 Download gff for UFO12227.5prime
Subject Subject Range Query Range Percent Splice Strand
zuc-RA 52..745 1..697 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:42 Download gff for UFO12227.5prime
Subject Subject Range Query Range Percent Splice Strand
zuc-RA 52..745 1..697 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:42 Download gff for UFO12227.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11989138..11989830 1..697 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:38 Download gff for UFO12227.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11989138..11989830 1..697 98   Minus