UFO12229.5prime Sequence
1099 bp (1009 high quality bases) assembled on 2012-09-06
> UFO12229.5prime
AGTCGACATGGTCTCCAAGTGGCTGCGCATCTTGGTTCTATTTCTTCTGG
GTCTTGCAACCTCGCGGGCCTCCCTATTTCGCTCCGAGTCGCCGAAACCA
CAGTTGAGCTGGTGGCACAAACAGTACTACCAGTCGCTATGGCAACAGAG
GCTGCGGTTTACGACGACTCCCCGGCCAGGAGCCACTCCCGAATCGGATG
AAGCCAGATTGGTGTATCCCTGCTACTGCTACAAGCCAACTCCCGAGGGC
TTGGCCACTGCCAGTCCGGTGGAGCAGCGAATGATTGAGACCAAGGAAAT
ATTCTTCTTGAACAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAA
AACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGG
TGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAAC
CCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGA
ATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCG
ATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGTACAAGGTGACACTAT
CCCATATCACAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGAC
ATTCATCAGGCGGCAGATTGGTGATAAAGCCGATAAACCTTGTGCTTATT
TTTCTTACGTCTTTAAAGCCGTAATCAGCCTGACGGGTCTGATTTAGTA
UFO12229.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13557-RA | 436 | CG13557-RA | 10..318 | 8..316 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23475816..23475991 | 316..141 | 880 | 100 | Minus |
| 2R | 25286936 | 2R | 23476276..23476409 | 141..8 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:05:59 has no hits.
UFO12229.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:12 Download gff for
UFO12229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13557-RA | 6..318 | 1..316 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:41 Download gff for
UFO12229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13557-RA | 6..318 | 1..316 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:46 Download gff for
UFO12229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13557-RA | 6..318 | 1..316 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:46 Download gff for
UFO12229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23475816..23475991 | 141..316 | 100 | <- | Minus |
| 2R | 23476277..23476413 | 1..140 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:41 Download gff for
UFO12229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19363339..19363514 | 141..316 | 100 | <- | Minus |
| arm_2R | 19363800..19363936 | 1..140 | 97 | | Minus |
