UFO12232.5prime Sequence
1117 bp (1036 high quality bases) assembled on 2012-09-06
> UFO12232.5prime
AGTCGACATGTTGGGCCGCAGCAGTGTGATTGCACGCAACTTTTCCCAGT
CGATGGTTCGCTTTAGCGGACATGGTGGAGTTCCCGGAGAGAATCTTCCC
TTCGGGCTGACGAACAAGTACCGCATCACCGCCCTGTTCACCATCGGCTG
TGTCTTGGGCTTCGGATCGCCCTTCCTGATCGTCAGGCACCAACTGCTCA
AGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAG
CACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGA
AGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACC
CAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAA
ATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTA
GAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTT
TCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATAT
CACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCA
TCAGCGGGCAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTATTTTTC
TTTACGGTCTTTAAAAAGCGTATATCAGCTGACGGTCTGGTTATAGGTAC
ATGAGCACTGACTGAAATGCTCAAATGTTCTTTACGATGCATGGAATTAT
CACGGTGTAATATCAAGTGATTTTTCTCCAATTTAAGCTTCTTAGTCTGA
GATCCTAACTTCGTTAG
UFO12232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVIIc-RD | 625 | CG2249-RD | 284..485 | 4..205 | 995 | 99.5 | Plus |
| CoVIIc-RC | 853 | CG2249-RC | 507..708 | 4..205 | 995 | 99.5 | Plus |
| CoVIIc-RB | 418 | CG2249-RB | 77..278 | 4..205 | 995 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10049751..10049866 | 90..205 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 10049557..10049644 | 4..91 | 425 | 98.9 | Plus |
Blast to na_te.dros performed 2014-11-28 18:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 774..841 | 123 | 68.1 | Plus |
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 6608..6665 | 990..932 | 112 | 67.8 | Minus |
UFO12232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:13 Download gff for
UFO12232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2249-RA | 74..283 | 1..210 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:44 Download gff for
UFO12232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIIc-RB | 73..282 | 1..210 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:47 Download gff for
UFO12232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIIc-RB | 73..282 | 1..210 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:47 Download gff for
UFO12232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10049553..10049644 | 1..91 | 96 | -> | Plus |
| 2R | 10049753..10049866 | 92..205 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:44 Download gff for
UFO12232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5937058..5937149 | 1..91 | 96 | -> | Plus |
| arm_2R | 5937258..5937371 | 92..205 | 100 | == | Plus |
