UFO12235.5prime Sequence
1089 bp (975 high quality bases) assembled on 2012-09-06
> UFO12235.5prime
AGTCGACATGACAGACCCCCGCATCCGGCAACTGGTGATTAAATCCGGAG
TGGTCCGGCGGTTGACCAGGGAGAAGTACTGCTACGCCAAGGAAGTGCTG
ACCGAGCAGGCGCGGTTGGAGAAGCTCAGGGGCGACGGAGCCGACGACCA
CGTACTGCGCAAGCAGGAGGAGGTCATCCAGGAGTGCATCATGATGGTGC
CCGACTCCAAGAGAAGACTGCAGAAGGAGTACGAGGTACTGGAAAAGTAC
CTCGCCGATGAGCAGGACCTGATCGAGACAGATTCGTATAAGAAGGCAGC
AGAGATCCTCAAAGATGCCAAAGCTGAACTGGAGACCGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGT
ATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGG
CCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACG
AAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGGTTTTCAC
CGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGGAAATC
GTCGTGTATTCACTCCAGAGCGATGAAAACGTTCAGTTTGCTCATGGAAA
ACGGTGTAACAGGGTGAACACTATCCATATTCACAGCTCAACGTCTTTCA
TGCAATACGAAGTCCGATGAACCAATCATCAGGCGGCAGGATGTAATAAA
GCCGATTAACTTGGCTATTTCTACGGGCTGAAGGCGTAA
UFO12235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1890-RA | 704 | CG1890-RA | 140..469 | 8..337 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31743629..31743837 | 8..216 | 1045 | 100 | Plus |
| 3R | 32079331 | 3R | 31743891..31744013 | 215..337 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:05:45 has no hits.
UFO12235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:08 Download gff for
UFO12235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1890-RA | 124..453 | 8..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:32 Download gff for
UFO12235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1890-RA | 140..469 | 8..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:37 Download gff for
UFO12235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1890-RA | 140..469 | 8..337 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:37 Download gff for
UFO12235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31743629..31743837 | 8..216 | 100 | -> | Plus |
| 3R | 31743893..31744013 | 217..337 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:32 Download gff for
UFO12235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27569351..27569559 | 8..216 | 100 | -> | Plus |
| arm_3R | 27569615..27569735 | 217..337 | 100 | == | Plus |
