UFO12236.5prime Sequence
1121 bp (1010 high quality bases) assembled on 2012-09-06
> UFO12236.5prime
AGTCGACATGTCCTCCTCGTCGGCCAGAGACCAACCGGGAACCTCCCATG
ACAACTTCGAGGAATTCTACACAGAAGTGAAAGAAATTGAAAAACGTGAT
TCAGTTTTAACTCCTTCTCAACAAATTGATCGTTTACTTCGTCCAGGTTC
AACGTACTTCAATCTCAATCCGTTTGAGGTGCTCCAAATCGAGCCCGAGG
TCGAATTGGCGGATATAAAAAAGCGATACCGCACCTTGTCAATCCTCGTC
CATCCAGACAAGAATCCCGACAACCAGGAGCGCGCTCAAATGGCATTCGA
TATTGTGTCGCGTTCCTGGAAAATCCTCGAAAACGAACTCACGCGCAAAA
GGTGTCTGGAGGTGTACGAGGAGGCAAAGGGGCGAACGGATCAAATGATT
GCAGAAAAGCGTAAAAAGCTTAAAAAAGAGGGTCGGCCCACTGAGCCAAT
ACCCGAGGACGATCCCACCAAGTACAAGCACGCCATCTACGTTATGGTCA
TGAAACTGTTTGCCGACATGGAGCGTCGACGGCAAAAGCTCGACCAACGC
GACCAGGAGGAGCGAAAGCGAAAGCGCGAAACGGAAATCGAGGAGGAGGA
GCGGATAAAGGCGGACCGCGAATGGCAGCAGAACTTCGAAGAGTCGCGCC
AGAGCCGAGTAAACAGCTGGCATGACTTTCAGTCGGGTGCCGGCAAGTCC
AAGAAAGCCAAGAAACAAAAACATATGACCGGCATGATGGTTCCACCAAA
ATTTAAGCCCGAGTCGCGAGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTGGAGATCCTGGTCATGACTAGTGCTTGGATTCCTCACCAAT
AAAAAACGCCCGGCGCACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTTTTCAACAGGAGTCCAAGCGAGCTCGATATCA
ATACCGCCCCCGCCTTGCCACTCATCGCAGTACTGTTGTATTTCATAAGC
ATTCTGCGACATGAAGCACTCACACGGCATGATGACTGATCGCAGCGCAT
ACACACCTTGTCCTGCATATA
UFO12236.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10375-RA | 1008 | CG10375-RA | 90..852 | 7..769 | 3815 | 100 | Plus |
| CG10375-RB | 938 | CG10375-RB | 160..782 | 147..769 | 3115 | 100 | Plus |
| tst-RA | 4332 | CG10210-RA | 3903..4275 | 769..397 | 1865 | 100 | Minus |
| CG10375-RB | 938 | CG10375-RB | 90..161 | 7..78 | 360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23768456..23768828 | 397..769 | 1865 | 100 | Plus |
| 3R | 32079331 | 3R | 23768009..23768329 | 77..397 | 1605 | 100 | Plus |
| 3R | 32079331 | 3R | 23767801..23767872 | 7..78 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:05:48 has no hits.
UFO12236.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:09 Download gff for
UFO12236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10375-RA | 82..855 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:34 Download gff for
UFO12236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10375-RA | 82..855 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:38 Download gff for
UFO12236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10375-RA | 82..855 | 1..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:38 Download gff for
UFO12236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23767793..23767870 | 1..76 | 94 | -> | Plus |
| 3R | 23768009..23768329 | 77..397 | 100 | -> | Plus |
| 3R | 23768457..23768831 | 398..773 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:34 Download gff for
UFO12236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19593515..19593592 | 1..76 | 94 | -> | Plus |
| arm_3R | 19593731..19594051 | 77..397 | 100 | -> | Plus |
| arm_3R | 19594179..19594553 | 398..773 | 99 | == | Plus |
