UFO12237.5prime Sequence
1129 bp (979 high quality bases) assembled on 2012-09-06
> UFO12237.5prime
AGTCGACATGTCATTCTTACGCAGTGCTGTTGGTCTCCTGGCTCGTGTCA
AGCTCTTGGAGGGCTCACCGACTGTGCAAACGAGGCGCCACATCAAGCGA
TGGGTTTCGCCAACGTTACGTGAGCTCGCCCACCGGCAGAAGAAACTAGG
ACCACAAAAGCCAGAGCGGCGTTCTGGGTTCGTGGAGTGGAACCAGCGAT
CGGAGCTCTTCGCGTTCGGCAAGCGTTTGGGCGAATCCTTTGAATTGTCG
GAGCTGCAGCGTGCTTTTACAGAGAAATCGTTTGCAGAGCGGGAGGAGGA
TCGTCGTCGGCAGCTAGGCATTGAGGAGTCTGACCTCCAGATGCCTCACA
ATAGCGATCTGGTCGAGAAGGGCCAACAAATTGCCCGTGCCTACGTTGAG
GCCTTCCTGCAGCACCAGTTACCGAAGGTCCCTAATGAAGGACTCCAGGC
GATCGCCAGTTATCTACTTAGCACCGAAACGCTTGCTCACGTCTCGACCC
ACCTGGGCACAAAGGATCTGATACAGTCTACGGAATACCCGCCCTCGGCC
GAAAGTCAGGCCAAATCTTTACACGCAGTTATTGGCGCCCTGGCCAGTTC
CAGTGGAATCGAGAGGGCTTTCATTTTTGTACGCGATTTCATCTGCACGC
AACTGAATCAAAAGGACCTGTTGGAGGTGTGGACTCCCCAGGAACCAATC
CAGCTGCTGGAGAAGATATGCCAGGAGCGAAAGCTGGGCGAAGCGGAGCC
CCGCCTGCTTGGAGACTGCGGAAAGAACACTGTGCTAGCCGCCTACCAAG
TTGGCATCTACGCCAACCGGCAGCTACTGGGCAAGGGATTCGGTGAAGAT
GTGAAAACAGCACAGAGACTGCGGCACTCGACGCTCTGCAGAGCATCTTT
GACACCCGCGACAACCGGGAGACCTTTGACTTTGCCATTCAGCTAGAACC
AAGACCGTGCGACTTGGCGCAAGCTTTCTAGACCATTCGGTTGGGCGGCG
CGGGCCCAGGTAGTGTCATATCAATCATATCATATCCATATCACACTATG
CCTAGGATAATCTGTCATGACTAGTGCTTGATCTCACAATAAAACGCCGC
GGCACGAGCGTTCTGTAACAATCGAATGG
UFO12237.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL44-RA | 1122 | CG2109-RA | 59..1021 | 8..968 | 4705 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5469564..5470460 | 968..74 | 4310 | 99.2 | Minus |
| 3R | 32079331 | 3R | 5470512..5470578 | 74..8 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:06:08 has no hits.
UFO12237.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:14 Download gff for
UFO12237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL44-RA | 83..1045 | 8..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:48 Download gff for
UFO12237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL44-RA | 59..1021 | 8..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:51 Download gff for
UFO12237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL44-RA | 59..1021 | 8..968 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:51 Download gff for
UFO12237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5469564..5470459 | 75..968 | 99 | <- | Minus |
| 3R | 5470512..5470578 | 8..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:48 Download gff for
UFO12237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1295286..1296181 | 75..968 | 99 | <- | Minus |
| arm_3R | 1296234..1296300 | 8..74 | 100 | | Minus |
