UFO12240.5prime Sequence
1097 bp (978 high quality bases) assembled on 2012-09-06
> UFO12240.5prime
AGTCGACATGCCCTCCATATGGCTGTTAGTCTCGACGCTGGCTTTGGTTA
GCTGCCAGGACTATCATTACCACCGTCCACAGACTCCTTTCGTTGCGGAA
TCTTACCATCAGCACCAGCAGCCTCAAGCCACCAAGTTTGTGGTGCAGAC
TTTGGGTCGCACCTACGGTTTGGAAACCCAAAGGGCACCAGCCATCTATG
AGGATTATCAGACGCATATTGTGCAGCTCTTCCAGCAGCGACAGGTGCCG
CAGTATCATCAGGCTCCCCGCCAACAATTGCACACTTCTAGCTACCAGAA
TCCCCTGCTGGTCAGCGCCAACTACCAGGCCGGCACCGTGTCCTTGGCGC
CTCCAGCTCCCGCTGCTCCTGCCCAGCCACTGACCAGCTATGGGCCACCT
CACCTGCAGCACCAGTCACAGCCTCTGCAACCTCCACCGCAGACTCCCCA
ATACTTCCCCCAACAGCAGCAGCCACCTGCAAGCTATTTGCCACCTCAGC
AGCCTGCCCAGAAATTGTTCTTCGGCAATCCGTTTCCCTATGCCCCTGTG
ACGACCGGCTCGGGGCAACAGGTGCTGGATGCAGGACATGGATCAGGTGT
GGCGCCCAATGAAGTGCAGGCTCAGCTTTTGCAAGCCACCGGAGCTGCGC
CACCACAAACTCGAGTGGGTAACCAGGTGGCTCAGTCGCAGAGCTCCTCT
TTGGATGCCTATGACTACAAGCAGAGCACTCCCGGAGAAAACCGAGAGTA
CCAAAGGTTCGTCACCAGCTGCCCGGGAGGTGGAGCCTGCCAGCAGAAGG
AGTTCAATCCAGGCGAGGTGGATGAGAGCCACCAGCGGGTTCTGCAGACA
GTGCGAGCCAGTACCCCACCCTCGAGTGAGGGCTGCTACAAGAGCCAGGT
GATCTATGTTGCCAGCGGGAGCTGCTGTCATAGTCAGGGTCAGTTGCGAC
CAAGATCGACGCACTTTCGAGCGCAGAGCAGTCCTCTCAGATACCCTACA
ACGCAAGCTTACTAAGACATTCGATTGGCGCGCGGTCCAGTAAGTGGTCT
AATCATAATCCATATCTAATCGTAATTCACAACATTAGCTAAGGAAT
UFO12240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7080-RA | 1178 | CG7080-RA | 69..1070 | 8..1002 | 4740 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22329466..22330406 | 37..975 | 4420 | 99.2 | Plus |
Blast to na_te.dros performed 2014-11-28 18:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2260..2461 | 314..513 | 130 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6911 | 354..503 | 130 | 58.4 | Plus |
UFO12240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:15 Download gff for
UFO12240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7080-RA | 62..1072 | 1..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:49 Download gff for
UFO12240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7080-RA | 62..1072 | 1..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:52 Download gff for
UFO12240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7080-RA | 63..1073 | 1..1006 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:52 Download gff for
UFO12240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22329362..22329397 | 1..37 | 91 | -> | Plus |
| 3R | 22329467..22330410 | 38..981 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:49 Download gff for
UFO12240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18155189..18156132 | 38..981 | 98 | -> | Plus |
| arm_3R | 18155084..18155119 | 1..37 | 91 | -> | Plus |
