UFO12241.5prime Sequence
1088 bp (988 high quality bases) assembled on 2012-09-06
> UFO12241.5prime
AGTCGACATGGTTTATTGCCCGTACAACAAGGAGCACAAAATGCTGCGCA
AGAAGCTCCAGCAGCACATCTTAAAATGCCGTGTGATCTACAAAGACACG
GTGGAACTTATGGTTTGTCCCTTCAATAGTTCCCATTTGATACCAGAGCC
CCAGTTCTTTCAACACACCCAATCGTGCGAGGATCGAAACATTATAGTAC
ACTATCAGACCAGCGCTCCTGCTGTCCTCAGCGAAGACACCAGACACGCG
AAGATCGAGTCCGAGGAGAACTGGGATGACGACGAGAGTGTGCCCGATTA
CGATCCTCAGGTCTACTGTTCCAGGGCCAACATAGTGAGAGAGCCCAATG
GGTTGTTTCCCGCCCAGCGAAGGGCTTTCATCGAGCAGGAAAAACGTCGT
CACTTTGGCGAGGATTACGAGGAGGAGAAGAAGCCGCGGAAGGCCAAGGC
TCGCGCGGATCTTCGTCCCACTCCCTACGAGCACAGGAGGCCATACTCAA
GGCGCCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG
ACATGGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCGGCATC
AGCACCCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAACGGGGGC
GAGAGTGTCCATATTGCCACGTTTAATCAACTGTGAAACTCACCCAGGAT
GCTGAGACGAAAACATATCTCATAACCTTTAGGAATAGCATGCTTTCACG
TACCCGCCAATCTGCGAATATGTGTAGAACTGCGGAATTCGGTTGATCAT
CGAGCGATGAAACGTTCAGTAGCATGAACGGTACAGGG
UFO12241.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arx-RA | 892 | CG3893-RA | 79..583 | 4..508 | 2510 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18900904..18901251 | 508..161 | 1740 | 100 | Minus |
| 3L | 28110227 | 3L | 18901320..18901476 | 160..4 | 770 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:06:14 has no hits.
UFO12241.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:16 Download gff for
UFO12241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3893-RA | 14..527 | 1..516 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:52 Download gff for
UFO12241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3893-RA | 75..588 | 1..516 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:54 Download gff for
UFO12241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arx-RA | 75..588 | 1..516 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:54 Download gff for
UFO12241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18900904..18901251 | 161..508 | 100 | <- | Minus |
| 3L | 18901320..18901479 | 1..160 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:52 Download gff for
UFO12241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18894004..18894351 | 161..508 | 100 | <- | Minus |
| arm_3L | 18894420..18894579 | 1..160 | 98 | | Minus |
