UFO12242.5prime Sequence
1141 bp (1035 high quality bases) assembled on 2012-09-06
> UFO12242.5prime
AGTCGACATGAGCTCCGCGGAAGAAAACAGCAACAGCCCGGCCACCACGC
CCCAGGACACCGAGACCACCGAGCAGGCTAACCTCACGGATCTCGAGAAG
ATCGAGGAGGAGAAACTCAAGTCCAAGTATCCCAGCGGAATGCGCGTGCC
GGGCGGACACTCGGCCTTCCTCCAGAAAAGGCTGCAGAAGGGGCAAAAGT
TCTTCGACTCGGGCGATTACCAGATGGCCAAGCAGAAGGGTGGCGGCGTC
AAGCAGGTCTTTGCCAACAAGGTGACCACCGGGGAGGCCATTCCCACGCC
CGAAACCGTGCCGGCGCGCAAGACTTCGATCATCCAACCCTGTAACAAGT
TCCCGGCGACGAGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTG
AAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCC
TTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAAT
ATATGTGTAGAACTGCCGGAATCGTCGTGGTATTCACTCCAGAGCGATGA
AAACGTTTCAGTTTGCTCATGGAAAACGTGTACAGGTGACACTATCCCAT
ATCCACCAGCTCACGTCTTTCATGCATACGAATTCCGATGACCATCATCA
GCGGCCAGATGTGAATAGCGATAAACTTGGCTTATTTCCTACGGCCTGAA
AGCCGTAAATCAGCTGAACGGTCTGTTATAGTACACTTGTA
UFO12242.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| endos-RF | 1165 | CG6513-RF | 384..740 | 8..364 | 1785 | 100 | Plus |
| endos-RE | 1356 | CG6513-RE | 329..685 | 8..364 | 1785 | 100 | Plus |
| endos-RD | 1191 | CG6513-RD | 410..766 | 8..364 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14030807..14030992 | 193..8 | 930 | 100 | Minus |
| 3L | 28110227 | 3L | 14030250..14030421 | 364..193 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:06:17 has no hits.
UFO12242.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:17 Download gff for
UFO12242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endos-RA | 319..689 | 1..373 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:54 Download gff for
UFO12242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endos-RD | 402..772 | 1..373 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:55 Download gff for
UFO12242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endos-RD | 402..772 | 1..373 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:55 Download gff for
UFO12242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14030250..14030420 | 194..364 | 100 | <- | Minus |
| 3L | 14030807..14030995 | 1..193 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:54 Download gff for
UFO12242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14023350..14023520 | 194..364 | 100 | <- | Minus |
| arm_3L | 14023907..14024095 | 1..193 | 97 | | Minus |
