UFO12243.5prime Sequence
1148 bp (1029 high quality bases) assembled on 2012-09-06
> UFO12243.5prime
AGTCGACATGGTGGCCGTTAAGAAACAAAAGAAGGCTCTGGAGAGCACCA
ACGCCCGTCTGGCGCTGGTGATGAAGTCCGGCAAATACTGCCTGGGCTAC
AAGCAGACCTTGAAGACCCTGCGCCAGGGCAAGGCCAAACTGGTGCTCAT
CGCCAGCAACACGCCCGCCCTGAGGAAGTCCGAGATCGAGTACTACGCTA
TGCTGGCCAAGACTGAAGTCCAGCACTACAGCGGCACCAACATCGAGCTG
GGCACCGCCTGTGGTAAATACTTCCGCGTGTGCACCCTGTCCATCACCGA
TCCTGGAGATTCGGACATCATCCGCTCGCTGGAGACGGCCGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAA
ACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTG
CGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATAT
TGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAG
ACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTC
ACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAAT
CGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGA
AAACGGTGTAACAAGGTGAACACTATCCCATATCACAGCTCCACGTTCTT
TCATGCCATACGAAATTCCGATGACATTCATCAGGCGGGCAGATTGTGAA
TAACGCCGATAACTGTGCTTATTTTCGTACGGTCTTAAAAGCGTAATATC
CACTGAACGTTGGTTAGGTACATGAACACCGGACTGGAATGCCCTCCA
UFO12243.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL30-RE | 735 | CG10652-RE | 54..388 | 6..340 | 1675 | 100 | Plus |
| RpL30-RB | 477 | CG10652-RB | 54..388 | 6..340 | 1675 | 100 | Plus |
| RpL30-RC | 602 | CG10652-RC | 123..457 | 6..340 | 1675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19008948..19009117 | 175..6 | 850 | 100 | Minus |
| 2L | 23513712 | 2L | 19008378..19008545 | 340..173 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:06:20 has no hits.
UFO12243.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:18 Download gff for
UFO12243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL30-RC | 86..432 | 1..349 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:56 Download gff for
UFO12243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL30-RC | 50..396 | 1..349 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:57 Download gff for
UFO12243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL30-RC | 119..465 | 1..349 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:57 Download gff for
UFO12243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19008378..19008543 | 175..340 | 100 | <- | Minus |
| 2L | 19008949..19009121 | 1..174 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:56 Download gff for
UFO12243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19008378..19008543 | 175..340 | 100 | <- | Minus |
| arm_2L | 19008949..19009121 | 1..174 | 98 | | Minus |
