UFO12244.5prime Sequence
1133 bp (1026 high quality bases) assembled on 2012-09-06
> UFO12244.5prime
AGTCGACATGGCTCCACGCAACAAGGAACAGGAACAGGAAGTGCTCAACT
GGGTGTTCGCCGTGATTGGCGAGAAGGTCCCCAGCGGGCAGTACGAGGAC
ATTCTCAAGGACGGCATCTGGCTGTGCAAGCTGGCCAACAAACTGGCCCC
CGGATCGGTGAAGAAGATCCAGGAGCGCGGCACCAACTTCCAACTGATGG
AGAACATCCAGCGTTTCCAGGCAGCGGTCAAGAAGTACGGTGTGCCCGAG
GAGGAGATCTTCCAAACCGCCGATCTTTTCGAGCGTCGCAACATCCCCCA
GGTCACCCTCTCCCTGTACGCCCTTGGACGCATCACGCAAAAGCACCCCG
AGTACACTGGCCCCACACTGGGACCCAAGATGGCCGACAAGAACGAGCGC
AGCTTCACCGAAGAGCAGCTCCGTGCCCACGAGGGTGAGCTCAACCTGCA
GATGGGCTTCAACAAGGGCGCCTCGCAGGCTGGACACGGTGGTATGGGCA
ACACCCGCCACATGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGCCACGTTAAATCAAACTGTGAAAC
TCACCCAGGGATGCTGAAACGAAAACATATCTCAATAAACCCTTTAGGAA
ATAGGCCAGTTTCACGTACACCGCCACAATCTGCGAAATAAATGTGTAGA
ACTGCGAAATCGTTCTGCTATCACTCGAGCGATCAAACGTTTCAAGTTGC
CTATGACGGGTTAACGAGGGTAACTAATCCCAA
UFO12244.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5023-RA | 789 | CG5023-RA | 81..587 | 8..514 | 2520 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20174091..20174411 | 14..334 | 1605 | 100 | Plus |
| 3R | 32079331 | 3R | 20174491..20174670 | 335..514 | 885 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:06:23 has no hits.
UFO12244.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:18 Download gff for
UFO12244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5023-RA | 73..590 | 1..519 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:58 Download gff for
UFO12244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5023-RA | 74..591 | 1..519 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:59 Download gff for
UFO12244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5023-RA | 74..591 | 1..519 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:59 Download gff for
UFO12244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20174091..20174411 | 14..334 | 100 | -> | Plus |
| 3R | 20174491..20174670 | 335..514 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:58 Download gff for
UFO12244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15999813..16000133 | 14..334 | 100 | -> | Plus |
| arm_3R | 16000213..16000392 | 335..514 | 99 | == | Plus |
