UFO12245.5prime Sequence
1093 bp (970 high quality bases) assembled on 2012-09-06
> UFO12245.5prime
AGTCGACATGGCCAGCAACTTCACCCAGTCCCAGCCGTCCAGGATCACCA
GCTACATGGTCAACCAGCTGCAGCCGACGGCGCAGGAAACGAAGTTGGCG
CTGATTCCCAGTGCACCCCAGTGGCGCTCCCCCCAGCTGATGGTCGTCTT
CGAGGACGGTGATCTGCACTCAGCGCGCCACCAGTTGCTCCAGTCCCTGC
AGAATCCCTTTGCCGAGGGATCGGTGGCCACGTTGCTACTCCAGGAGAGC
ATTGCCGATCAGTTTGTGGGCCTAGTGGCGCAGGATTTGCGTCCGTTGTC
GCAGGAGGTGTCCAAGCATCCGAGCTACACCAGCACGCTGGCCAAGATCG
AAGAGCTGAAGGCCAAGACAGTACAAGGCGAAAGCCTTAAGGCTGGGGAA
TCACCCGTCTTGGTGTACGACTGCGTGCACAGCTATCTGGGCAATGGAGC
GACGGGAGTGGTGACGGTGCACACATTCCGCACAGCCAAGGAGGCCGGCC
AGTTGGCCAAAAGGGATCCCCTACCTTACGGCCAAGTTAGTCTGTGGAAT
GAGAAGCTGGGCTGCGCCTACGAACTGATACCACGACTACCGAGCGATAT
TGTGGCCATTAATTGCTTCAATCCGGACTTGGATCCCATCTGGGAATCCT
TTGCTGCCGACCGCAACGATGTTCTGCTGGCCAAGAACTATCACTATGAA
TCGCTGGTGGTGAGCGGCAAACGGAGGATCGTCGTCTTTCCCGTGGGCAC
CATCTTCGGCAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGATTCTCACCAATAAAAACG
CCCGGCAGTAACCGAGCGTTCTGAACAAATCCAGATGGAGTCTGAGTCAT
TACTGATCTATCAACAGGAGTCAGCCGAGCTCGATATCTAATTTACGCCC
CTGCCTGCCACTCATCGCAGTACTGTTGTATTCATTTAGCATTCTGGCGA
CTGTAGCATTCACACCGGCATGATTGACCTGATTCGCCTGCGT
UFO12245.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MFS10-RC | 3329 | CG4330-RC | 84..840 | 7..763 | 3785 | 100 | Plus |
| CG15717-RE | 1150 | CG15717-RE | 78..834 | 7..763 | 3785 | 100 | Plus |
| CG15717-RC | 3329 | CG15717-RC | 84..840 | 7..763 | 3785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13129304..13129974 | 93..763 | 3355 | 100 | Plus |
| X | 23542271 | X | 13129101..13129188 | 7..94 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:06:26 has no hits.
UFO12245.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:19 Download gff for
UFO12245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15717-RA | 78..843 | 1..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:00 Download gff for
UFO12245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15717-RA | 80..845 | 1..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:00 Download gff for
UFO12245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15717-RC | 80..845 | 1..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:00 Download gff for
UFO12245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13129097..13129188 | 1..94 | 96 | -> | Plus |
| X | 13129306..13129973 | 95..762 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:00 Download gff for
UFO12245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13023130..13023221 | 1..94 | 96 | -> | Plus |
| arm_X | 13023339..13024006 | 95..762 | 100 | <- | Plus |
