UFO12247.5prime Sequence
1050 bp (902 high quality bases) assembled on 2012-09-06
> UFO12247.5prime
AGTCGACATGTCGGGGCGCCTTAACCACCAGCACGCGGCGTATGCGCATC
GCATGGAACAGGAACACAACCGGGTGCAGGCCACACAGGCAGTGAACAGC
TACTACAGCCATTGGGGTAAGGTCACATCACGCTTCGAAAACTGGACCAA
CAAAGAGTACTATGAGAAGGCGGATCAACAGCTGCAATCCCGTCGCGATC
AGCAGGAGAAGGAGGCAGCTCTTAATGAACGTCGGTCCAGACTTCGCCAG
CTTCTGGCCTCGGAGAGCGAAGAGTACAACAACGAGATGGAGCGACGTCG
CCGGCCTCGGGAACCCGGTGGTGGAGACCTCCAGATGCTTGATCGGGTTA
ACCAGTCGCTTAAGGAGCAAGAGCAACTGCGTCGCAAGCTCGAGATGGAA
GCCAAGTTGTACGGCCGCTGGCGTCATGGCGTCGACGATGAAAAGCTGCT
CTACCAGTCCAAGTCGGACAACGAAGTGCTGGCCAAGCTCAACTGGCTGG
ACCGCCAGATCGAGAGTCAGCAGCAGCGCGAGGAGCAGCAGGCCCTGGCC
GCGGAGAGGCAGCTCCTGCTGCAGCAGGAAATCAGTCGCACGGAACAAGC
TCAAAAGGAGCGCCAGCAGATCCGGGAGCAACAATTGCGCGAACTGCGTG
CTCTGCAAGAATCCCACATGTCCGAGCTTCGTCTGCGACAGCAGGAGGCG
GACAAGTTGACGGAGGAGGAGCAGCACTTCCAGCTCTTCCTGGGCGAACT
GGACAAAGAGCGGGAATTGCTGGAGGAGAGCAGTGCTCTGGTGCTCAAAC
AAGTCGATTCCGGACACGCCTTCAACCTAAGAGATTGATCTTCATCCGGC
AGCGTAGTGAGGCCAGTCGAGCAGATCTCCTGTGCATCACATGCTGCATC
GCATGACCAAGTATGTGTCAGACGAGTAGCTAAGACCCTGCTGACAGTAC
GCTCCAGTGGAGACGAGACTGCTGCCCAGATCGAAGCATGTACGGTCGAG
CAAGTACACTACGCGCACTGAGAACTGCGTACCGCCTGCCACGCTACGGA
UFO12247.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17230-RC | 3470 | CG17230-RC | 160..1206 | 8..1022 | 4430 | 96.5 | Plus |
| CG17230-RB | 1736 | CG17230-RB | 160..1206 | 8..1022 | 4430 | 96.5 | Plus |
| CG17230-RA | 1927 | CG17230-RA | 351..1397 | 8..1022 | 4430 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11464062..11464979 | 8..917 | 4225 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:06:05 has no hits.
UFO12247.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:13 Download gff for
UFO12247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17230-RB | 157..1132 | 1..963 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:46 Download gff for
UFO12247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17230-RA | 348..1323 | 1..963 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:49 Download gff for
UFO12247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17230-RA | 348..1323 | 1..963 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:49 Download gff for
UFO12247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11464059..11465039 | 1..967 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:46 Download gff for
UFO12247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7289781..7290761 | 1..967 | 97 | -> | Plus |
