UFO12250.5prime Sequence
1101 bp (997 high quality bases) assembled on 2012-09-06
> UFO12250.5prime
AGTCGACATGACTCGAAAACAAATTGCTACGCCCCGCTGTGAAACTATCT
CCAAATTGGTGGTCAGCGTCGGCAGTGGCGAAACTTTTCTTACTTATGCA
GATGCTACAACACGATCCTTCTGCGCGAATCCCTCGTGGCTGAACTTTCA
AAATGGCATGATGGAAGTGGGGCCGATTAGTAAACCGAATCCCCATGATT
CTCAAAAGGAGGCAACCTCATTTCTGGAGCGACATTTCGGAAGCAAGCGT
CTGGACTCCGAGCAAATGAACGCGGAATTTAAGAACAGGAAGACGATTAT
CTGGCACACTTGGCTGGTGGAGAAGGTGCGGTTTCCTCCAGCTCAGTGTG
CGGTCATCAAGGAATGGAAGGATCCAATCACGGAGACTCTGGGCATTTGC
TATTGTTCCTGGCACTTGCAGAGCTGCATGGCCTGGCAGCTTATTCTCAG
TAATCGAATGACGGATGCCAAGTGCTTCTGTTCGCGAATCAAGAAAACGA
TGGACATTGTCAACTGTCTCGTTGACTCGGAAGTGGAACAGGAGAAAACA
TTTAAGGATTGTTCTTCCCCCTTAGCCGTGTTAACCGAGAAAGTGCTTGA
TGCCACTGATATGCTGAAGAAACTGAATGATCTTCTAGAGCTCCAGGAGA
AACTCAATCGGAAATACAAACGCCTGTGTGTAGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAATTACGCCCCGCCCTGCACTCATCGCAGTACTGTGT
ATCATAAGCATCTGCGACTGAAGCATCACAACGGCATGATGACTGATCCG
CCAGCGCATCAGCACTGTTGCTGCGTATAATATTTGCCAGTGAACCGGGG
CGAAGAGTGTCATATGCACGTTAATCAACTGTAACTACAGGAATGCTGAC
G
UFO12250.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24c-RC | 2251 | CG9002-RC | 1473..2148 | 7..682 | 3350 | 99.7 | Plus |
| CG30461-RJ | 2251 | CG30461-RJ | 1473..2148 | 7..682 | 3350 | 99.7 | Plus |
| CG30461-RI | 861 | CG30461-RI | 83..758 | 7..682 | 3350 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16996356..16996752 | 474..78 | 1955 | 99.5 | Minus |
| 2R | 25286936 | 2R | 16996094..16996302 | 682..474 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 16996992..16997063 | 78..7 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:06:37 has no hits.
UFO12250.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:22 Download gff for
UFO12250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30461-RD | 60..741 | 1..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:09 Download gff for
UFO12250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RC | 1467..2148 | 1..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:06 Download gff for
UFO12250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30461-RI | 77..758 | 1..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:06 Download gff for
UFO12250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16996094..16996301 | 475..682 | 100 | <- | Minus |
| 2R | 16996356..16996751 | 79..474 | 99 | <- | Minus |
| 2R | 16996992..16997065 | 1..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:09 Download gff for
UFO12250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12883599..12883806 | 475..682 | 100 | <- | Minus |
| arm_2R | 12883861..12884256 | 79..474 | 99 | <- | Minus |
| arm_2R | 12884497..12884570 | 1..78 | 94 | | Minus |
