UFO12254.5prime Sequence
1108 bp (1014 high quality bases) assembled on 2012-09-06
> UFO12254.5prime
AGTCGACATGTCACAGCTGCGCTCGAAAGTCATTAGCCTCTACAAGCACT
TGCAGTATTTGGGCCGCGAATATCCCGGCCTGAACGGGCCGCAGAAGTTC
AGGAAGCAGATCCACGATGCCTTCATGAACCACAAGGACGAGCAGGATCC
CAAGAAGATCGTCGCCCTGCTAGCCCAAGGACGTTACTTGGCCAAGGAGG
TGGAGGCCCTGTACTCGCTGAAGAAGTACCGAAGTGTCAAGCAGCGCTAT
AGTTACAATGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCG
GCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACG
GGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAA
ACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTT
TAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATAT
ATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGA
AAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTAT
CCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCAGGATGA
GCATTCATCAGCGGGCAGATGTGAATAACGCGATAAACTGTGCTTATTTT
TCTTACGTCTTTAAAAGCGTATATCAGCTGACGGTCTGTTATAGTACATG
AGCACTGACTGATGCCTCGAATGTTCCTTACGCAGTGCAATGAATATCAC
GGTGATAT
UFO12254.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6115-RB | 743 | CG6115-RB | 133..387 | 8..262 | 1275 | 100 | Plus |
| CG6115-RA | 727 | CG6115-RA | 133..387 | 8..262 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16887465..16887681 | 262..46 | 1070 | 99.5 | Minus |
| 2L | 23513712 | 2L | 16887793..16887834 | 49..8 | 210 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 831..898 | 123 | 68.1 | Plus |
UFO12254.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-06 17:02:25 Download gff for
UFO12254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6115-RA | 122..387 | 1..267 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:16 Download gff for
UFO12254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6115-RA | 126..391 | 1..267 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:11 Download gff for
UFO12254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6115-RA | 126..391 | 1..267 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:11 Download gff for
UFO12254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16887465..16887677 | 50..262 | 100 | <- | Minus |
| 2L | 16887793..16887837 | 1..49 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:16 Download gff for
UFO12254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16887465..16887677 | 50..262 | 100 | <- | Minus |
| arm_2L | 16887793..16887837 | 1..49 | 91 | | Minus |
